ABOUT THIS RECORDspecies: Sus scrofa
miRNA family: mir-127
source: miRBase, original name: ssc-mir-127 (MI0013144)
Taxonomy by NCBI:
Sus scrofa Sus Suidae Suina Cetartiodactyla Laurasiatheria Eutheria Theria Mammalia Amniota Tetrapoda Sarcopterygii Euteleostomi Teleostomi Gnathostomata Vertebrata Craniata Chordata Deuterostomia Coelomata Bilateria Eumetazoa Metazoa Fungi/Metazoa group Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA TCGGATCCGTCTGAGCTTGGCT miRNA* CCTGCTGAAGCTCAGAGGGCTCTGATT mismatches: 2 bulges: 5 |
pre-miRNA
ATCGCTGTCTCCAGCCTGCTGAAGCTCAGAGGGCTCTGATTCAGAAAGATCATCGGATCCGTCTGAGCTTGGCTGGTCGG
dot-bracket secondary structure
....(((...((((((.....(((((((((.((.((((((((.....))..)))))).)).))))))))))))))).)))
SIMILARITIES
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miRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
download this record
evidence: Solexa
references
[1] Nielsen M, Hansen JH, Hedegaard J, Nielsen RO, Panitz F, Bendixen C, Thomsen B, Anim Genet. 41:159-168(2010)., "MicroRNA identity and abundance in porcine skeletal muscles determined by deep sequencing"
ATCGCTGTCTCCAGCCTGCTGAAGCTCAGAGGGCTCTGATTCAGAAAGATCATCGGATCCGTCTGAGCTTGGCTGGTCGG
dot-bracket secondary structure
....(((...((((((.....(((((((((.((.((((((((.....))..)))))).)).))))))))))))))).)))
SIMILARITIES| miRBase age-mir-127: 9e-38 PMRD no hits microPC no hits | UniProt no hits RFAM mir-127: 3e-25 |
Identical with: cfa-mir-127 from miRBase (MNEST026693) |
MOREmiRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
download this record
evidence: Solexa
references
[1] Nielsen M, Hansen JH, Hedegaard J, Nielsen RO, Panitz F, Bendixen C, Thomsen B, Anim Genet. 41:159-168(2010)., "MicroRNA identity and abundance in porcine skeletal muscles determined by deep sequencing"
