ABOUT THIS RECORDspecies: Sus scrofa
miRNA family: mir-129
source: miRBase, original name: ssc-mir-129b (MI0017986)
Taxonomy by NCBI:
Sus scrofa Sus Suidae Suina Cetartiodactyla Laurasiatheria Eutheria Theria Mammalia Amniota Tetrapoda Sarcopterygii Euteleostomi Teleostomi Gnathostomata Vertebrata Craniata Chordata Deuterostomia Coelomata Bilateria Eumetazoa Metazoa Fungi/Metazoa group Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA CTTTTTGCGGTCTGGGCTTGC miRNA* AAGCCCTTACCCCAAAAAGTA mismatches: 4 bulges: 0 |
pre-miRNA
CCCTTTGGATCTTTTTGCGGTCTGGGCTTGCTGTTCCTCTCTACAGTAGTCAGGAAGCCCTTACCCCAAAAAGTATCTGCGGGA
dot-bracket secondary structure
.(((.((((((((((((.(((..((((((.(((..(..((....))..).))).))))))..))).))))))).))))).))).
SIMILARITIES
MORE
miRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
download this record
evidence: Solexa
deep sequencing data evidence
references
[1] Li G, Li Y, Li X, Ning X, Li M, Yang G, J Cell Biochem. 112:1318-1328(2011)., "MicroRNA identity and abundance in developing swine adipose tissue as determined by solexa sequencing"
CCCTTTGGATCTTTTTGCGGTCTGGGCTTGCTGTTCCTCTCTACAGTAGTCAGGAAGCCCTTACCCCAAAAAGTATCTGCGGGA
dot-bracket secondary structure
.(((.((((((((((((.(((..((((((.(((..(..((....))..).))).))))))..))).))))))).))))).))).
SIMILARITIES| miRBase bta-mir-129-1: 2e-35 PMRD no hits microPC no hits | UniProt no hits RFAM mir-129: 6e-36 |
Identical with: bta-mir-129-1 from miRBase (MNEST033208) |
MOREmiRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
download this record
evidence: Solexa
deep sequencing data evidence
references
[1] Li G, Li Y, Li X, Ning X, Li M, Yang G, J Cell Biochem. 112:1318-1328(2011)., "MicroRNA identity and abundance in developing swine adipose tissue as determined by solexa sequencing"
