ABOUT THIS RECORDspecies: Sus scrofa
miRNA family: mir-148
source: miRBase, original name: ssc-mir-148b (MI0013118)
Taxonomy by NCBI:
Sus scrofa Sus Suidae Suina Cetartiodactyla Laurasiatheria Eutheria Theria Mammalia Amniota Tetrapoda Sarcopterygii Euteleostomi Teleostomi Gnathostomata Vertebrata Craniata Chordata Deuterostomia Coelomata Bilateria Eumetazoa Metazoa Fungi/Metazoa group Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA TCAGTGCATCACAGAACTTTGT miRNA* GAAGTTCTGTTATACACTCAGGCT mismatches: 4 bulges: 2 |
pre-miRNA
ATTTGAGGTGAAGTTCTGTTATACACTCAGGCTGTGGCTCTCTGAAAGTCAGTGCATCACAGAACTTTGTCTCGAAAGCT
dot-bracket secondary structure
.(((((((..(((((((((.((.((((..((((....(.....)..)))))))).)).)))))))))..)))))))....
SIMILARITIES
MORE
miRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
download this record
evidence: Solexa
deep sequencing data evidence
references
[1] Nielsen M, Hansen JH, Hedegaard J, Nielsen RO, Panitz F, Bendixen C, Thomsen B, Anim Genet. 41:159-168(2010)., "MicroRNA identity and abundance in porcine skeletal muscles determined by deep sequencing"
ATTTGAGGTGAAGTTCTGTTATACACTCAGGCTGTGGCTCTCTGAAAGTCAGTGCATCACAGAACTTTGTCTCGAAAGCT
dot-bracket secondary structure
.(((((((..(((((((((.((.((((..((((....(.....)..)))))))).)).)))))))))..)))))))....
SIMILARITIES| miRBase eca-mir-148b: 4e-40 PMRD no hits microPC no hits | UniProt no hits RFAM mir-148: 2e-36 |
Identical with: cfa-mir-148b from miRBase (MNEST026724) |
MOREmiRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
download this record
evidence: Solexa
deep sequencing data evidence
references
[1] Nielsen M, Hansen JH, Hedegaard J, Nielsen RO, Panitz F, Bendixen C, Thomsen B, Anim Genet. 41:159-168(2010)., "MicroRNA identity and abundance in porcine skeletal muscles determined by deep sequencing"
