ABOUT THIS RECORDspecies: Sus scrofa
miRNA family: mir-149
source: miRBase, original name: ssc-mir-149 (MI0016620)
Taxonomy by NCBI:
Sus scrofa Sus Suidae Suina Cetartiodactyla Laurasiatheria Eutheria Theria Mammalia Amniota Tetrapoda Sarcopterygii Euteleostomi Teleostomi Gnathostomata Vertebrata Craniata Chordata Deuterostomia Coelomata Bilateria Eumetazoa Metazoa Fungi/Metazoa group Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA TCTGGCTCCGTGTCTTCACTCCC miRNA* GAGGGAGGGACGGGGGCTGTGC mismatches: 4 bulges: 1 |
pre-miRNA
GCCCAGGCTCTGGCTCCGTGTCTTCACTCCCGTGTGTGTCCGAGGAGGGAGGGAGGGACGGGGGCTGTGCTGGGGC
dot-bracket secondary structure
((((.(((.(.(.((((((.(((((.(((((...((....))....)))))))))).)))))).).).))).))))
SIMILARITIES
MORE
miRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
download this record
evidence: cloned
references
[1] Cho IS, Kim J, Seo HY, Lim do H, Hong JS, Park YH, Park DC, Hong KC, Whang KY, Lee YS, Mol Biol Rep. 37:3567-3574(2010)., "Cloning and characterization of microRNAs from porcine skeletal muscle and adipose tissue"
GCCCAGGCTCTGGCTCCGTGTCTTCACTCCCGTGTGTGTCCGAGGAGGGAGGGAGGGACGGGGGCTGTGCTGGGGC
dot-bracket secondary structure
((((.(((.(.(.((((((.(((((.(((((...((....))....)))))))))).)))))).).).))).))))
SIMILARITIES| miRBase eca-mir-149: 8e-38 PMRD no hits microPC no hits | UniProt no hits RFAM mir-149: 9e-32 |
Identical with: eca-mir-149 from miRBase (MNEST027053) |
MOREmiRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
download this record
evidence: cloned
references
[1] Cho IS, Kim J, Seo HY, Lim do H, Hong JS, Park YH, Park DC, Hong KC, Whang KY, Lee YS, Mol Biol Rep. 37:3567-3574(2010)., "Cloning and characterization of microRNAs from porcine skeletal muscle and adipose tissue"
