ABOUT THIS RECORDspecies: Sus scrofa
miRNA family: mir-423
source: miRBase, original name: ssc-mir-423 (MI0013099)
Taxonomy by NCBI:
Sus scrofa Sus Suidae Suina Cetartiodactyla Laurasiatheria Eutheria Theria Mammalia Amniota Tetrapoda Sarcopterygii Euteleostomi Teleostomi Gnathostomata Vertebrata Craniata Chordata Deuterostomia Coelomata Bilateria Eumetazoa Metazoa Fungi/Metazoa group Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA TGAGGGGCAGAGAGCGAGACTTT miRNA* AGCTCGGTCTGAGGCCCCTCAGT mismatches: 3 bulges: 2 |
pre-miRNA
AAGTTAGGCTGAGGGGCAGAGAGCGAGACTTTTCTATTTTCCAAAAGCTCGGTCTGAGGCCCCTCAGTCTTGCTTCCTAC
dot-bracket secondary structure
((((.((((((((((((..(((.((((.(((((.........))))))))).)))...)))))))))))).)))).....
SIMILARITIES
MORE
miRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
download this record
evidence: Solexa
references
[1] Nielsen M, Hansen JH, Hedegaard J, Nielsen RO, Panitz F, Bendixen C, Thomsen B, Anim Genet. 41:159-168(2010)., "MicroRNA identity and abundance in porcine skeletal muscles determined by deep sequencing"
AAGTTAGGCTGAGGGGCAGAGAGCGAGACTTTTCTATTTTCCAAAAGCTCGGTCTGAGGCCCCTCAGTCTTGCTTCCTAC
dot-bracket secondary structure
((((.((((((((((((..(((.((((.(((((.........))))))))).)))...)))))))))))).)))).....
SIMILARITIES| miRBase mml-mir-423: 4e-40 PMRD no hits microPC no hits | UniProt no hits RFAM mir-423: 1e-37 |
Identical with: ppy-mir-423 from miRBase (MNEST030999) |
MOREmiRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
download this record
evidence: Solexa
references
[1] Nielsen M, Hansen JH, Hedegaard J, Nielsen RO, Panitz F, Bendixen C, Thomsen B, Anim Genet. 41:159-168(2010)., "MicroRNA identity and abundance in porcine skeletal muscles determined by deep sequencing"
