ABOUT THIS RECORDspecies: Sus scrofa
miRNA family: mir-379
source: miRBase, original name: ssc-mir-758 (MI0014777)
Taxonomy by NCBI:
Sus scrofa Sus Suidae Suina Cetartiodactyla Laurasiatheria Eutheria Theria Mammalia Amniota Tetrapoda Sarcopterygii Euteleostomi Teleostomi Gnathostomata Vertebrata Craniata Chordata Deuterostomia Coelomata Bilateria Eumetazoa Metazoa Fungi/Metazoa group Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA TTTGTGACCTGGTCCACTAAC miRNA* TGGTTGACCAGAGAGCACACG mismatches: 7 bulges: 0 |
pre-miRNA
GGTACATGAGGTGGTTGACCAGAGAGCACACGCTTTATTGTGCCGTTTGTGACCTGGTCCACTAACCCTCAGTATC
dot-bracket secondary structure
(((((.(((((((((.((((((...(((.((((........).))).)))...)))))).))))..))))))))))
SIMILARITIES
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miRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
download this record
evidence: cloned
references
[1] Cho IS, Kim J, Seo HY, Lim do H, Hong JS, Park YH, Park DC, Hong KC, Whang KY, Lee YS, Mol Biol Rep. 37:3567-3574(2010)., "Cloning and characterization of microRNAs from porcine skeletal muscle and adipose tissue"
GGTACATGAGGTGGTTGACCAGAGAGCACACGCTTTATTGTGCCGTTTGTGACCTGGTCCACTAACCCTCAGTATC
dot-bracket secondary structure
(((((.(((((((((.((((((...(((.((((........).))).)))...)))))).))))..))))))))))
SIMILARITIES| miRBase cfa-mir-758: 3e-31 PMRD no hits microPC no hits | UniProt no hits RFAM mir-154: 3e-25 |
MOREmiRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
download this record
evidence: cloned
references
[1] Cho IS, Kim J, Seo HY, Lim do H, Hong JS, Park YH, Park DC, Hong KC, Whang KY, Lee YS, Mol Biol Rep. 37:3567-3574(2010)., "Cloning and characterization of microRNAs from porcine skeletal muscle and adipose tissue"
