ABOUT THIS RECORDspecies: Sus scrofa
source: miRBase, original name: ssc-mir-1285 (MI0013164)
Taxonomy by NCBI:
Sus scrofa Sus Suidae Suina Cetartiodactyla Laurasiatheria Eutheria Theria Mammalia Amniota Tetrapoda Sarcopterygii Euteleostomi Teleostomi Gnathostomata Vertebrata Craniata Chordata Deuterostomia Coelomata Bilateria Eumetazoa Metazoa Fungi/Metazoa group Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA CTGGGCAACATAGCGAGACCCCGT miRNA* GGGATCGCGCCTGTGAATAGCCACTGT mismatches: 8 bulges: 3 |
pre-miRNA
GCTGATCAGTAGTGGGATCGCGCCTGTGAATAGCCACTGTACTCCAGCCTGGGCAACATAGCGAGACCCCGTCTCTTTTG
dot-bracket secondary structure
.......((.((((((.((.(((.((((....(((.(((.....)))....)))..))))))).)).)))).))))....
SIMILARITIES
MORE
miRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
download this record
evidence: Solexa
references
[1] Nielsen M, Hansen JH, Hedegaard J, Nielsen RO, Panitz F, Bendixen C, Thomsen B, Anim Genet. 41:159-168(2010)., "MicroRNA identity and abundance in porcine skeletal muscles determined by deep sequencing"
GCTGATCAGTAGTGGGATCGCGCCTGTGAATAGCCACTGTACTCCAGCCTGGGCAACATAGCGAGACCCCGTCTCTTTTG
dot-bracket secondary structure
.......((.((((((.((.(((.((((....(((.(((.....)))....)))..))))))).)).)))).))))....
SIMILARITIES| miRBase hsa-mir-1273e: 0.0000009 PMRD no hits microPC no hits | UniProt no hits RFAM Metazoa_SRP: 1e-34 |
MOREmiRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
download this record
evidence: Solexa
references
[1] Nielsen M, Hansen JH, Hedegaard J, Nielsen RO, Panitz F, Bendixen C, Thomsen B, Anim Genet. 41:159-168(2010)., "MicroRNA identity and abundance in porcine skeletal muscles determined by deep sequencing"
