ABOUT THIS RECORDspecies: Sus scrofa
miRNA family: mir-1296
source: miRBase, original name: ssc-mir-1296 (MI0015931)
Taxonomy by NCBI:
Sus scrofa Sus Suidae Suina Cetartiodactyla Laurasiatheria Eutheria Theria Mammalia Amniota Tetrapoda Sarcopterygii Euteleostomi Teleostomi Gnathostomata Vertebrata Craniata Chordata Deuterostomia Coelomata Bilateria Eumetazoa Metazoa Fungi/Metazoa group Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA GAGTGGGGTTTTGACCCTAACC miRNA* TTAGGGCCCTGGCTCCATCTCC mismatches: 5 bulges: 0 |
pre-miRNA
CCTAACTGGGTTAGGGCCCTGGCTCCATCTCCTTTAGGAAAACCTTCTGTGGGGAGTGGGGTTTTGACCCTAACCCAGCTGGGCT
dot-bracket secondary structure
((((.(((((((((((.(..((((((((..(((.(((((.....))))).)))..))))))))..).))))))))))).))))..
SIMILARITIES
MORE
miRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
download this record
evidence: Solexa
references
[1] Sharbati S, Friedlander MR, Sharbati J, Hoeke L, Chen W, Keller A, Stahler PF, Rajewsky N, Einspanier R, BMC Genomics. 11:275(2010)., "Deciphering the porcine intestinal microRNA transcriptome"
CCTAACTGGGTTAGGGCCCTGGCTCCATCTCCTTTAGGAAAACCTTCTGTGGGGAGTGGGGTTTTGACCCTAACCCAGCTGGGCT
dot-bracket secondary structure
((((.(((((((((((.(..((((((((..(((.(((((.....))))).)))..))))))))..).))))))))))).))))..
SIMILARITIES| miRBase bta-mir-1296: 2e-38 PMRD no hits microPC no hits | UniProt no hits RFAM mir-1296: 2e-39 |
MOREmiRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
download this record
evidence: Solexa
references
[1] Sharbati S, Friedlander MR, Sharbati J, Hoeke L, Chen W, Keller A, Stahler PF, Rajewsky N, Einspanier R, BMC Genomics. 11:275(2010)., "Deciphering the porcine intestinal microRNA transcriptome"
