ABOUT THIS RECORDspecies: Sus scrofa
miRNA family: mir-2476
source: miRBase, original name: ssc-mir-2476-2 (MI0017999)
Taxonomy by NCBI:
Sus scrofa Sus Suidae Suina Cetartiodactyla Laurasiatheria Eutheria Theria Mammalia Amniota Tetrapoda Sarcopterygii Euteleostomi Teleostomi Gnathostomata Vertebrata Craniata Chordata Deuterostomia Coelomata Bilateria Eumetazoa Metazoa Fungi/Metazoa group Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA TCCCTGTGGTCTAGTGGTTAG miRNA* CACTGCTGGTCTGGGGACT mismatches: 4 bulges: 2 |
pre-miRNA
AAACCAGAGCTCCCTGTGGTCTAGTGGTTAGAATTCAGCATTTTCACTGCTGGTCTGGGGACTGAGAT
dot-bracket secondary structure
....(((...(((((..((.((((..((.(((((.....))))).))..)))).))))))))))....
SIMILARITIES
MORE
miRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
download this record
evidence: Solexa
references
[1] Li G, Li Y, Li X, Ning X, Li M, Yang G, J Cell Biochem. 112:1318-1328(2011)., "MicroRNA identity and abundance in developing swine adipose tissue as determined by solexa sequencing"
AAACCAGAGCTCCCTGTGGTCTAGTGGTTAGAATTCAGCATTTTCACTGCTGGTCTGGGGACTGAGAT
dot-bracket secondary structure
....(((...(((((..((.((((..((.(((((.....))))).))..)))).))))))))))....
SIMILARITIES| miRBase bta-mir-2476: 0.0000002 PMRD no hits microPC no hits | UniProt no hits RFAM tRNA: 0.00000001 |
MOREmiRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
download this record
evidence: Solexa
references
[1] Li G, Li Y, Li X, Ning X, Li M, Yang G, J Cell Biochem. 112:1318-1328(2011)., "MicroRNA identity and abundance in developing swine adipose tissue as determined by solexa sequencing"
