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ABOUT THIS RECORD
ID:
MNEST034160
species:
Sus scrofa
source:
miRBase, original name:
ssc-mir-4335
(
MI0015923
)
Taxonomy by NCBI:
Sus scrofa
Sus
Suidae
Suina
Cetartiodactyla
Laurasiatheria
Eutheria
Theria
Mammalia
Amniota
Tetrapoda
Sarcopterygii
Euteleostomi
Teleostomi
Gnathostomata
Vertebrata
Craniata
Chordata
Deuterostomia
Coelomata
Bilateria
Eumetazoa
Metazoa
Fungi/Metazoa group
Eukaryota
cellular organisms
SEQUENCE & STRUCTURE
miRNA
GTGCCCAGCGCTGCAGGGCA
miRNA*
CCCCACGTTGGGCGCCA
mismatches:
1
bulges:
3
View larger
pre-miRNA
CCTCTTCCAG
CCCCACGTTGGGCGCCA
CTCTGCT
GTGCCCAGCGCTGCAGGGCA
ATAGGGAAGC
dot-bracket secondary structure
...(((((.(
(((((((((((((((..
.......
)))))))))).))..)))).
....))))).
SIMILARITIES
miRBase
no hits
PMRD
no hits
microPC
no hits
UniProt
no hits
RFAM
MPMV_package: 0.0002
MORE
miRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction:
true miRNA
additional data
download this record
evidence:
Solexa
references
[
1
] Sharbati S, Friedlander MR, Sharbati J, Hoeke L, Chen W, Keller A, Stahler PF, Rajewsky N, Einspanier R,
BMC Genomics. 11:275(2010).
,
"Deciphering the porcine intestinal microRNA transcriptome"