ABOUT THIS RECORDspecies: Danio rerio
miRNA family: let-7
source: miRBase, original name: dre-let-7c-2 (MI0001867)
Taxonomy by NCBI:
Danio rerio Danio Cyprinidae Cyprinoidea Cypriniformes Cypriniphysi Otophysi Ostariophysi Otocephala Clupeocephala Elopocephala Teleostei Neopterygii Actinopteri Actinopterygii Euteleostomi Teleostomi Gnathostomata Vertebrata Craniata Chordata Deuterostomia Coelomata Bilateria Eumetazoa Metazoa Fungi/Metazoa group Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA TGAGGTAGTAGGTTGTATGGTT miRNA* CTGTACAACCTTCTAGCTTTCC mismatches: 3 bulges: 0 |
pre-miRNA
GTGTGCATCCAGGCTGAGGTAGTAGGTTGTATGGTTTCGAATGACACCATGGGAGTTAACTGTACAACCTTCTAGCTTTCCTTGGAGTACAC
dot-bracket secondary structure
((((((.((((((..(((.(((.(((((((((((((((..(((....)))..))...))))))))))))).))).)))..))))))))))))
SIMILARITIES
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miRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
download this record
evidence: cloned
deep sequencing data evidence
references
[1] Chen PY, Manninga H, Slanchev K, Chien M, Russo JJ, Ju J, Sheridan R, John B, Marks DS, Gaidatzis D, Sander C, Zavolan M, Tuschl T, Genes Dev. 19:1288-1293(2005)., "The developmental miRNA profiles of zebrafish as determined by small RNA cloning"
GTGTGCATCCAGGCTGAGGTAGTAGGTTGTATGGTTTCGAATGACACCATGGGAGTTAACTGTACAACCTTCTAGCTTTCCTTGGAGTACAC
dot-bracket secondary structure
((((((.((((((..(((.(((.(((((((((((((((..(((....)))..))...))))))))))))).))).)))..))))))))))))
SIMILARITIES| miRBase xtr-let-7c: 4e-37 PMRD no hits microPC no hits | UniProt no hits RFAM let-7: 1e-25 |
MOREmiRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
download this record
evidence: cloned
deep sequencing data evidence
references
[1] Chen PY, Manninga H, Slanchev K, Chien M, Russo JJ, Ju J, Sheridan R, John B, Marks DS, Gaidatzis D, Sander C, Zavolan M, Tuschl T, Genes Dev. 19:1288-1293(2005)., "The developmental miRNA profiles of zebrafish as determined by small RNA cloning"
