miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: Browse

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ABOUT THIS RECORD

ID: MNEST034178
species: Danio rerio
miRNA family: let-7
source: miRBase, original name: dre-let-7f (MI0001872)

Taxonomy by NCBI:
Danio rerio Danio Cyprinidae Cyprinoidea Cypriniformes Cypriniphysi Otophysi Ostariophysi Otocephala Clupeocephala Elopocephala Teleostei Neopterygii Actinopteri Actinopterygii Euteleostomi Teleostomi Gnathostomata Vertebrata Craniata Chordata Deuterostomia Coelomata Bilateria Eumetazoa Metazoa Fungi/Metazoa group Eukaryota cellular organisms






SEQUENCE & STRUCTURE
miRNA
TGAGGTAGTAGATTGTATAGTT

miRNA*
CTATACAATCTATTGCCTTCCC

mismatches: 2
bulges: 0

View larger
pre-miRNA
TGGTAATGCTTGTGCAGTGTGAGGTAGTAGATTGTATAGTTGTAGGGTAGTGATTTTATCCTGTGTAGAAGATAACTATACAATCTATTGCCTTCCCTGA
GGGGCAGAAATACACA


dot-bracket secondary structure
..(((.(((((.(.(((.(..(((((((((((((((((((((((((((((.....))))))).........))))))))))))))))))))))..)))))
.)))))....)))...



SIMILARITIES
miRBase rno-mir-3596d: 8e-33

PMRD no hits

microPC no hits
UniProt no hits

RFAM let-7: 5e-28

MORE

miRNEST target predictions: none
non-miRNEST targets
HuntMi prediction: true miRNA
additional data
download this record
evidence: cloned

references

[1] Chen PY, Manninga H, Slanchev K, Chien M, Russo JJ, Ju J, Sheridan R, John B, Marks DS, Gaidatzis D, Sander C, Zavolan M, Tuschl T, Genes Dev. 19:1288-1293(2005)., "The developmental miRNA profiles of zebrafish as determined by small RNA cloning"




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