ABOUT THIS RECORD

ID: MNEST034181
species: Danio rerio
miRNA family: let-7
source: miRBase, original name: dre-let-7h (MI0001875)

Taxonomy by NCBI:
Danio rerio Danio Cyprinidae Cyprinoidea Cypriniformes Cypriniphysi Otophysi Ostariophysi Otocephala Clupeocephala Elopocephala Teleostei Neopterygii Actinopteri Actinopterygii Euteleostomi Teleostomi Gnathostomata Vertebrata Craniata Chordata Deuterostomia Coelomata Bilateria Eumetazoa Metazoa Fungi/Metazoa group Eukaryota cellular organisms






SEQUENCE & STRUCTURE

pre-miRNA
GAGTTGGCTGTGTTGTGGTGAGGTAGTAAGTTGTGTTGTTGTTGGGGATCAGTATAGTATGGCCCTTGAAGGAGATAACTATACAATTTACTGCCTTCCA
TAATGCAGACTCTC

dot-bracket secondary structure
((((...(((((((((((.(((((((((((((((((.((((((((((.(((........))))))).......)))))).))))))))))))))))))))
))))))))))))..


SIMILARITIES

miRBase tni-let-7h: 2e-18 PMRD no hits microPC no hits

UniProt no hits RFAM let-7: 3e-45

MORE

miRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
download this record
evidence: cloned
deep sequencing data evidence

references
[1] Chen PY, Manninga H, Slanchev K, Chien M, Russo JJ, Ju J, Sheridan R, John B, Marks DS, Gaidatzis D, Sander C, Zavolan M, Tuschl T, Genes Dev. 19:1288-1293(2005)., "The developmental miRNA profiles of zebrafish as determined by small RNA cloning"