ABOUT THIS RECORD

ID: MNEST034184
species: Danio rerio
miRNA family: mir-1
source: miRBase, original name: dre-mir-1-1 (MI0001878)

Taxonomy by NCBI:
Danio rerio Danio Cyprinidae Cyprinoidea Cypriniformes Cypriniphysi Otophysi Ostariophysi Otocephala Clupeocephala Elopocephala Teleostei Neopterygii Actinopteri Actinopterygii Euteleostomi Teleostomi Gnathostomata Vertebrata Craniata Chordata Deuterostomia Coelomata Bilateria Eumetazoa Metazoa Fungi/Metazoa group Eukaryota cellular organisms






SEQUENCE & STRUCTURE

pre-miRNA
GCCCATATATCCCGCTTGGTAGACATACTTCTTTATATGCCCATATGAACAAGAGCAGCTATGGAATGTAAAGAAGTATGTATCCCAGGTGAGAGAAAAA
CGGGGC

dot-bracket secondary structure
((((.....((.(((((((...((((((((((((((((..(((((((........))..))))).))))))))))))))))...))))))).))......
..))))


SIMILARITIES

miRBase tgu-mir-1-1: 2e-17 PMRD no hits microPC no hits

UniProt no hits RFAM mir-1: 2e-27

MORE

miRNEST target predictions: none
non-miRNEST targets
HuntMi prediction: true miRNA
additional data
download this record
evidence: cloned
deep sequencing data evidence

references
[1] Chen PY, Manninga H, Slanchev K, Chien M, Russo JJ, Ju J, Sheridan R, John B, Marks DS, Gaidatzis D, Sander C, Zavolan M, Tuschl T, Genes Dev. 19:1288-1293(2005)., "The developmental miRNA profiles of zebrafish as determined by small RNA cloning"