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ABOUT THIS RECORD
ID:
MNEST034197
species:
Danio rerio
miRNA family:
mir-10
source:
miRBase, original name:
dre-mir-10a
(
MI0001363
)
Taxonomy by NCBI:
Danio rerio
Danio
Cyprinidae
Cyprinoidea
Cypriniformes
Cypriniphysi
Otophysi
Ostariophysi
Otocephala
Clupeocephala
Elopocephala
Teleostei
Neopterygii
Actinopteri
Actinopterygii
Euteleostomi
Teleostomi
Gnathostomata
Vertebrata
Craniata
Chordata
Deuterostomia
Coelomata
Bilateria
Eumetazoa
Metazoa
Fungi/Metazoa group
Eukaryota
cellular organisms
SEQUENCE & STRUCTURE
miRNA
TACCCTGTAGATCCGAATTTGT
miRNA*
AAATTCGTGTCTTGGGGAATA
mismatches:
3
bulges:
1
View larger
pre-miRNA
TGTCTGTCATCTATATA
TACCCTGTAGATCCGAATTTGT
GTGAATATACAGTCGC
AAATTCGTGTCTTGGGGAATA
TGTAGTTGACATAAACACAACGC
dot-bracket secondary structure
....(((((.(((((((
(.(((((.(((..(((((((((
(............)))
)))))))..)))))))).)))
))))).)))))............
SIMILARITIES
miRBase
eca-mir-10a
:
3e-16
PMRD
no hits
microPC
no hits
UniProt
no hits
RFAM
mir-10: 0.00000000002
MORE
miRNEST target predictions: none
non-miRNEST targets
HuntMi prediction:
true miRNA
additional data
download this record
evidence:
cloned
deep sequencing data evidence
references
[
1
] Lim LP, Glasner ME, Yekta S, Burge CB, Bartel DP,
Science. 299:1540(2003).
,
"Vertebrate microRNA genes"
[
2
] Chen PY, Manninga H, Slanchev K, Chien M, Russo JJ, Ju J, Sheridan R, John B, Marks DS, Gaidatzis D, Sander C, Zavolan M, Tuschl T,
Genes Dev. 19:1288-1293(2005).
,
"The developmental miRNA profiles of zebrafish as determined by small RNA cloning"