ABOUT THIS RECORDspecies: Danio rerio
miRNA family: mir-15
source: miRBase, original name: dre-mir-15c (MI0004779)
Taxonomy by NCBI:
Danio rerio Danio Cyprinidae Cyprinoidea Cypriniformes Cypriniphysi Otophysi Ostariophysi Otocephala Clupeocephala Elopocephala Teleostei Neopterygii Actinopteri Actinopterygii Euteleostomi Teleostomi Gnathostomata Vertebrata Craniata Chordata Deuterostomia Coelomata Bilateria Eumetazoa Metazoa Fungi/Metazoa group Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA AAGCAGCGCGTCATGGTTTTC miRNA* AAGCCATCATTTGCTGCTCTA mismatches: 4 bulges: 0 |
pre-miRNA
CCTTAGACCGCTAAAGCAGCGCGTCATGGTTTTCAACATTAGAGAAGGTGCAAGCCATCATTTGCTGCTCTAGAGTTTTAAGG
dot-bracket secondary structure
(((((((.(.(((.(((((((.((.(((((((.((...((....))..)).))))))).)).))))))).))).).)))))))
SIMILARITIES
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miRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
download this record
evidence: cloned, Northern
references
[1] Kloosterman WP, Steiner FA, Berezikov E, de Bruijn E, van de Belt J, Verheul M, Cuppen E, Plasterk RH, Nucleic Acids Res. 34:2558-2569(2006)., "Cloning and expression of new microRNAs from zebrafish"
CCTTAGACCGCTAAAGCAGCGCGTCATGGTTTTCAACATTAGAGAAGGTGCAAGCCATCATTTGCTGCTCTAGAGTTTTAAGG
dot-bracket secondary structure
(((((((.(.(((.(((((((.((.(((((((.((...((....))..)).))))))).)).))))))).))).).)))))))
SIMILARITIES| miRBase fru-mir-15b: 0.00002 PMRD no hits microPC no hits | UniProt no hits RFAM mir-15: 1e-40 |
MOREmiRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
download this record
evidence: cloned, Northern
references
[1] Kloosterman WP, Steiner FA, Berezikov E, de Bruijn E, van de Belt J, Verheul M, Cuppen E, Plasterk RH, Nucleic Acids Res. 34:2558-2569(2006)., "Cloning and expression of new microRNAs from zebrafish"
