ABOUT THIS RECORD

ID: MNEST034218
species: Danio rerio
miRNA family: mir-17
source: miRBase, original name: dre-mir-20a (MI0001907)

Taxonomy by NCBI:
Danio rerio Danio Cyprinidae Cyprinoidea Cypriniformes Cypriniphysi Otophysi Ostariophysi Otocephala Clupeocephala Elopocephala Teleostei Neopterygii Actinopteri Actinopterygii Euteleostomi Teleostomi Gnathostomata Vertebrata Craniata Chordata Deuterostomia Coelomata Bilateria Eumetazoa Metazoa Fungi/Metazoa group Eukaryota cellular organisms






SEQUENCE & STRUCTURE

pre-miRNA
TCTTAAATAAATCTCCTAATGTTGCAGTTGTGTTAGAGTTTCAGCAGTGCTAAAGTGCTTATAGTGCAGGTAGTATTTCTGTCATCTACTGCAGTGTGAG
CACTTGAAGTACTTCTAGCTTAATGCGTCTGGGATCCGAAGATTTCTGCTAGA

dot-bracket secondary structure
(((.....((((((.(....(((.(((.((((((.(((((..((.((((((.(((((((((((.(((((.(((............)))))))).))))))
)))))..)))))).))))))))))))).))).)))..).)))))).....)))


SIMILARITIES

miRBase xtr-mir-20a: 3e-17 PMRD no hits microPC no hits

UniProt no hits RFAM mir-17: 3e-18

MORE

miRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
download this record
evidence: cloned

references
[1] Chen PY, Manninga H, Slanchev K, Chien M, Russo JJ, Ju J, Sheridan R, John B, Marks DS, Gaidatzis D, Sander C, Zavolan M, Tuschl T, Genes Dev. 19:1288-1293(2005)., "The developmental miRNA profiles of zebrafish as determined by small RNA cloning"