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ABOUT THIS RECORD

ID: MNEST034228
species: Danio rerio
miRNA family: mir-24
source: miRBase, original name: dre-mir-24-1 (MI0001921)

Taxonomy by NCBI:
Danio rerio Danio Cyprinidae Cyprinoidea Cypriniformes Cypriniphysi Otophysi Ostariophysi Otocephala Clupeocephala Elopocephala Teleostei Neopterygii Actinopteri Actinopterygii Euteleostomi Teleostomi Gnathostomata Vertebrata Craniata Chordata Deuterostomia Coelomata Bilateria Eumetazoa Metazoa Fungi/Metazoa group Eukaryota cellular organisms






SEQUENCE & STRUCTURE
miRNA
TGGCTCAGTTCAGCAGGAACAG

miRNA*
GTGCCTTCTGAGCTGATATCAGT

mismatches: 4
bulges: 1

View larger
pre-miRNA
ACCTGAGCTCCGGTGCCTTCTGAGCTGATATCAGTTGTAGTAAATCACTGGCTCAGTTCAGCAGGAACAGGAGTGTGGCC

dot-bracket secondary structure
.((...(((((.((.(((.(((((((((..(((((.((.....)).))))).))))))))).))).)).)))))..))..


SIMILARITIES
miRBase tni-mir-24-1: 0.0000000000003

PMRD no hits

microPC no hits
UniProt no hits

RFAM mir-24: 1e-30

MORE

miRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
download this record
evidence: cloned
deep sequencing data evidence

references

[1] Chen PY, Manninga H, Slanchev K, Chien M, Russo JJ, Ju J, Sheridan R, John B, Marks DS, Gaidatzis D, Sander C, Zavolan M, Tuschl T, Genes Dev. 19:1288-1293(2005)., "The developmental miRNA profiles of zebrafish as determined by small RNA cloning"




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