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ABOUT THIS RECORD

ID: MNEST034231
species: Danio rerio
miRNA family: mir-24
source: miRBase, original name: dre-mir-24-4 (MI0001918)

Taxonomy by NCBI:
Danio rerio Danio Cyprinidae Cyprinoidea Cypriniformes Cypriniphysi Otophysi Ostariophysi Otocephala Clupeocephala Elopocephala Teleostei Neopterygii Actinopteri Actinopterygii Euteleostomi Teleostomi Gnathostomata Vertebrata Craniata Chordata Deuterostomia Coelomata Bilateria Eumetazoa Metazoa Fungi/Metazoa group Eukaryota cellular organisms






SEQUENCE & STRUCTURE
miRNA
TGGCTCAGTTCAGCAGGAACAG

miRNA*
GTGCCTGCTAAACTGGTATCAGT

mismatches: 3
bulges: 1

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pre-miRNA
GAGGGCTGTTCCCACTTGTGCCTGCTAAACTGGTATCAGTATGTTGATTTAGTGCTGGCTCAGTTCAGCAGGAACAGGTGTGAAGTCCTC

dot-bracket secondary structure
(((((((..((.(((((((.((((((.((((((..(((((((.........))))))).)))))).)))))).))))))).)))))))))


SIMILARITIES
miRBase fru-mir-24-2: 0.0000003

PMRD no hits

microPC no hits
UniProt no hits

RFAM mir-24: 1e-31

MORE

miRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
download this record
evidence: cloned
deep sequencing data evidence

references

[1] Chen PY, Manninga H, Slanchev K, Chien M, Russo JJ, Ju J, Sheridan R, John B, Marks DS, Gaidatzis D, Sander C, Zavolan M, Tuschl T, Genes Dev. 19:1288-1293(2005)., "The developmental miRNA profiles of zebrafish as determined by small RNA cloning"




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