ABOUT THIS RECORDspecies: Danio rerio
miRNA family: mir-31
source: miRBase, original name: dre-mir-31 (MI0003691)
Taxonomy by NCBI:
Danio rerio Danio Cyprinidae Cyprinoidea Cypriniformes Cypriniphysi Otophysi Ostariophysi Otocephala Clupeocephala Elopocephala Teleostei Neopterygii Actinopteri Actinopterygii Euteleostomi Teleostomi Gnathostomata Vertebrata Craniata Chordata Deuterostomia Coelomata Bilateria Eumetazoa Metazoa Fungi/Metazoa group Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA GGCAAGATGTTGGCATAGCTG miRNA* TGCTATGCCTCCATATTGCCAT mismatches: 4 bulges: 0 |
pre-miRNA
GAAGAGATGGCAAGATGTTGGCATAGCTGTTAATGTTTATGGGCCTGCTATGCCTCCATATTGCCATTTCTG
dot-bracket secondary structure
..(((((((((((.(((..((((((((.((..((....))..))..))))))))..))).))))))))))).
SIMILARITIES
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miRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
download this record
evidence: array, in-situ
references
[1] Wienholds E, Kloosterman WP, Miska E, Alvarez-Saavedra E, Berezikov E, de Bruijn E, Horvitz HR, Kauppinen S, Plasterk RH, Science. 309:310-311(2005)., "MicroRNA expression in zebrafish embryonic development"
GAAGAGATGGCAAGATGTTGGCATAGCTGTTAATGTTTATGGGCCTGCTATGCCTCCATATTGCCATTTCTG
dot-bracket secondary structure
..(((((((((((.(((..((((((((.((..((....))..))..))))))))..))).))))))))))).
SIMILARITIES| miRBase bfl-mir-31: 0.0000002 PMRD no hits microPC no hits | UniProt no hits RFAM mir-31: 3e-34 |
MOREmiRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
download this record
evidence: array, in-situ
references
[1] Wienholds E, Kloosterman WP, Miska E, Alvarez-Saavedra E, Berezikov E, de Bruijn E, Horvitz HR, Kauppinen S, Plasterk RH, Science. 309:310-311(2005)., "MicroRNA expression in zebrafish embryonic development"
