ABOUT THIS RECORDspecies: Danio rerio
miRNA family: mir-34
source: miRBase, original name: dre-mir-34 (MI0001365)
Taxonomy by NCBI:
Danio rerio Danio Cyprinidae Cyprinoidea Cypriniformes Cypriniphysi Otophysi Ostariophysi Otocephala Clupeocephala Elopocephala Teleostei Neopterygii Actinopteri Actinopterygii Euteleostomi Teleostomi Gnathostomata Vertebrata Craniata Chordata Deuterostomia Coelomata Bilateria Eumetazoa Metazoa Fungi/Metazoa group Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA TGGCAGTGTCTTAGCTGGTTGT miRNA* AATCAGCAAGTATACTGCCGCA mismatches: 0 bulges: 2 |
pre-miRNA
CTGCTGTGAGTGGTTCTCTGGCAGTGTCTTAGCTGGTTGTTGTGTGGAGTGAGAACGAAGCAATCAGCAAGTATACTGCCGCAGAAACTCGTCACCTT
dot-bracket secondary structure
.....((((..((((((.((((((((((((.((((((((((.(((.........))).))))))))))))).))))))))).)).))))..))))...
SIMILARITIES
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miRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
download this record
evidence: cloned
deep sequencing data evidence
references
[1] Lim LP, Glasner ME, Yekta S, Burge CB, Bartel DP, Science. 299:1540(2003)., "Vertebrate microRNA genes"
[2] Chen PY, Manninga H, Slanchev K, Chien M, Russo JJ, Ju J, Sheridan R, John B, Marks DS, Gaidatzis D, Sander C, Zavolan M, Tuschl T, Genes Dev. 19:1288-1293(2005)., "The developmental miRNA profiles of zebrafish as determined by small RNA cloning"
CTGCTGTGAGTGGTTCTCTGGCAGTGTCTTAGCTGGTTGTTGTGTGGAGTGAGAACGAAGCAATCAGCAAGTATACTGCCGCAGAAACTCGTCACCTT
dot-bracket secondary structure
.....((((..((((((.((((((((((((.((((((((((.(((.........))).))))))))))))).))))))))).)).))))..))))...
SIMILARITIES| miRBase age-mir-34a: 2e-20 PMRD no hits microPC no hits | UniProt no hits RFAM mir-34: 1e-34 |
MOREmiRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
download this record
evidence: cloned
deep sequencing data evidence
references
[1] Lim LP, Glasner ME, Yekta S, Burge CB, Bartel DP, Science. 299:1540(2003)., "Vertebrate microRNA genes"
[2] Chen PY, Manninga H, Slanchev K, Chien M, Russo JJ, Ju J, Sheridan R, John B, Marks DS, Gaidatzis D, Sander C, Zavolan M, Tuschl T, Genes Dev. 19:1288-1293(2005)., "The developmental miRNA profiles of zebrafish as determined by small RNA cloning"
