ABOUT THIS RECORDspecies: Danio rerio
miRNA family: mir-34
source: miRBase, original name: dre-mir-34b (MI0003690)
Taxonomy by NCBI:
Danio rerio Danio Cyprinidae Cyprinoidea Cypriniformes Cypriniphysi Otophysi Ostariophysi Otocephala Clupeocephala Elopocephala Teleostei Neopterygii Actinopteri Actinopterygii Euteleostomi Teleostomi Gnathostomata Vertebrata Craniata Chordata Deuterostomia Coelomata Bilateria Eumetazoa Metazoa Fungi/Metazoa group Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA TAGGCAGTGTTGTTAGCTGATTG miRNA* ATCACTAACCATACTGCCAACA mismatches: 2 bulges: 1 |
pre-miRNA
GGGGTTGGTCTGTAGGCAGTGTTGTTAGCTGATTGTTTCATATGAACTATAATCACTAACCATACTGCCAACACAACAACCTACA
dot-bracket secondary structure
.((((((...(((.((((((((.(((((.((((((((((....)))..)))))))))))).)))))))).)))...))))))...
SIMILARITIES
MORE
miRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
download this record
evidence: in-situ
references
[1] Wienholds E, Kloosterman WP, Miska E, Alvarez-Saavedra E, Berezikov E, de Bruijn E, Horvitz HR, Kauppinen S, Plasterk RH, Science. 309:310-311(2005)., "MicroRNA expression in zebrafish embryonic development"
GGGGTTGGTCTGTAGGCAGTGTTGTTAGCTGATTGTTTCATATGAACTATAATCACTAACCATACTGCCAACACAACAACCTACA
dot-bracket secondary structure
.((((((...(((.((((((((.(((((.((((((((((....)))..)))))))))))).)))))))).)))...))))))...
SIMILARITIES| miRBase gga-mir-34b: 0.0002 PMRD no hits microPC no hits | UniProt no hits RFAM mir-34: 7e-39 |
MOREmiRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
download this record
evidence: in-situ
references
[1] Wienholds E, Kloosterman WP, Miska E, Alvarez-Saavedra E, Berezikov E, de Bruijn E, Horvitz HR, Kauppinen S, Plasterk RH, Science. 309:310-311(2005)., "MicroRNA expression in zebrafish embryonic development"
