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ABOUT THIS RECORD
ID:
MNEST034269
species:
Danio rerio
miRNA family:
mir-103
source:
miRBase, original name:
dre-mir-107b
(
MI0010843
)
Taxonomy by NCBI:
Danio rerio
Danio
Cyprinidae
Cyprinoidea
Cypriniformes
Cypriniphysi
Otophysi
Ostariophysi
Otocephala
Clupeocephala
Elopocephala
Teleostei
Neopterygii
Actinopteri
Actinopterygii
Euteleostomi
Teleostomi
Gnathostomata
Vertebrata
Craniata
Chordata
Deuterostomia
Coelomata
Bilateria
Eumetazoa
Metazoa
Fungi/Metazoa group
Eukaryota
cellular organisms
SEQUENCE & STRUCTURE
miRNA
AGCAGCATTGTACAGGGCTTT
miRNA*
GGCTTCTCTACAGTGTTGCCTTG
mismatches:
3
bulges:
2
View larger
pre-miRNA
TCTGGCCACTCTG
GGCTTCTCTACAGTGTTGCCTTG
TAGCCTGGTGATCA
AGCAGCATTGTACAGGGCTTT
CAGCGTGTACAGAAC
dot-bracket secondary structure
((((..(((.(((
((((.((.(((((((((((.(((
..((...))...))
)))))))))))).))))))..
))).)))..))))..
SIMILARITIES
miRBase
mdo-mir-107
:
3e-16
PMRD
no hits
microPC
no hits
UniProt
no hits
RFAM
mir-103: 1e-37
MORE
miRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction:
true miRNA
additional data
download this record
evidence:
454
references
[
1
] Soares AR, Pereira PM, Santos B, Egas C, Gomes AC, Arrais J, Oliveira JL, Moura GR, Santos MA,
BMC Genomics. 10:195(2009).
,
"Parallel DNA pyrosequencing unveils new zebrafish microRNAs"