ABOUT THIS RECORDspecies: Danio rerio
miRNA family: mir-130
source: miRBase, original name: dre-mir-130a-1 (MI0001984)
Taxonomy by NCBI:
Danio rerio Danio Cyprinidae Cyprinoidea Cypriniformes Cypriniphysi Otophysi Ostariophysi Otocephala Clupeocephala Elopocephala Teleostei Neopterygii Actinopteri Actinopterygii Euteleostomi Teleostomi Gnathostomata Vertebrata Craniata Chordata Deuterostomia Coelomata Bilateria Eumetazoa Metazoa Fungi/Metazoa group Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA CAGTGCAATGTTAAAAGGGCAT miRNA* GCCCCTTTTATATTGTACTACT mismatches: 3 bulges: 0 |
pre-miRNA
TGTCTGTCCAGTGCCCCTTTTATATTGTACTACTGATAACCCAGTTATTAAAGCAGTGCAATGTTAAAAGGGCATTGGCCAGGGA
dot-bracket secondary structure
..((((.(((((((((.(((.((((((((((.((((((((...))))))..)).)))))))))).))).))))))))).))))..
SIMILARITIES
MORE
miRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
download this record
evidence: cloned
deep sequencing data evidence
references
[1] Chen PY, Manninga H, Slanchev K, Chien M, Russo JJ, Ju J, Sheridan R, John B, Marks DS, Gaidatzis D, Sander C, Zavolan M, Tuschl T, Genes Dev. 19:1288-1293(2005)., "The developmental miRNA profiles of zebrafish as determined by small RNA cloning"
TGTCTGTCCAGTGCCCCTTTTATATTGTACTACTGATAACCCAGTTATTAAAGCAGTGCAATGTTAAAAGGGCATTGGCCAGGGA
dot-bracket secondary structure
..((((.(((((((((.(((.((((((((((.((((((((...))))))..)).)))))))))).))).))))))))).))))..
SIMILARITIES| miRBase dre-mir-130a-2: 4e-43 PMRD no hits microPC no hits | UniProt no hits RFAM mir-130: 3e-41 |
Identical with: dre-mir-130a-2 from miRBase (MNEST034290) |
MOREmiRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
download this record
evidence: cloned
deep sequencing data evidence
references
[1] Chen PY, Manninga H, Slanchev K, Chien M, Russo JJ, Ju J, Sheridan R, John B, Marks DS, Gaidatzis D, Sander C, Zavolan M, Tuschl T, Genes Dev. 19:1288-1293(2005)., "The developmental miRNA profiles of zebrafish as determined by small RNA cloning"
