ABOUT THIS RECORDspecies: Danio rerio
miRNA family: mir-133
source: miRBase, original name: dre-mir-133a-1 (MI0001993)
Taxonomy by NCBI:
Danio rerio Danio Cyprinidae Cyprinoidea Cypriniformes Cypriniphysi Otophysi Ostariophysi Otocephala Clupeocephala Elopocephala Teleostei Neopterygii Actinopteri Actinopterygii Euteleostomi Teleostomi Gnathostomata Vertebrata Craniata Chordata Deuterostomia Coelomata Bilateria Eumetazoa Metazoa Fungi/Metazoa group Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA TTTGGTCCCCTTCAACCAGCTG miRNA* GCTGGTAAAATGGAACCAAATC mismatches: 5 bulges: 0 |
pre-miRNA
CATCAAACCACAATGCTTTGCTAAAGCTGGTAAAATGGAACCAAATCACCTCTTCAATGGATTTGGTCCCCTTCAACCAGCTGTAGCTATGCTTTGATG
dot-bracket secondary structure
(((((((.......((...((((.(((((((..((.((.((((((((............)))))))).)).))..))))))).))))...)))))))))
SIMILARITIES
MORE
miRNEST target predictions: none
non-miRNEST targets
HuntMi prediction: true miRNA
additional data
download this record
evidence: cloned
references
[1] Chen PY, Manninga H, Slanchev K, Chien M, Russo JJ, Ju J, Sheridan R, John B, Marks DS, Gaidatzis D, Sander C, Zavolan M, Tuschl T, Genes Dev. 19:1288-1293(2005)., "The developmental miRNA profiles of zebrafish as determined by small RNA cloning"
CATCAAACCACAATGCTTTGCTAAAGCTGGTAAAATGGAACCAAATCACCTCTTCAATGGATTTGGTCCCCTTCAACCAGCTGTAGCTATGCTTTGATG
dot-bracket secondary structure
(((((((.......((...((((.(((((((..((.((.((((((((............)))))))).)).))..))))))).))))...)))))))))
SIMILARITIES| miRBase gga-mir-133a-1: 7e-42 PMRD no hits microPC no hits | UniProt no hits RFAM mir-133: 7e-30 |
Identical with: tgu-mir-133-1 from miRBase (MNEST026462) |
MOREmiRNEST target predictions: none
non-miRNEST targets
HuntMi prediction: true miRNA
additional data
download this record
evidence: cloned
references
[1] Chen PY, Manninga H, Slanchev K, Chien M, Russo JJ, Ju J, Sheridan R, John B, Marks DS, Gaidatzis D, Sander C, Zavolan M, Tuschl T, Genes Dev. 19:1288-1293(2005)., "The developmental miRNA profiles of zebrafish as determined by small RNA cloning"
