ABOUT THIS RECORDspecies: Danio rerio
miRNA family: mir-135
source: miRBase, original name: dre-mir-135a (MI0003692)
Taxonomy by NCBI:
Danio rerio Danio Cyprinidae Cyprinoidea Cypriniformes Cypriniphysi Otophysi Ostariophysi Otocephala Clupeocephala Elopocephala Teleostei Neopterygii Actinopteri Actinopterygii Euteleostomi Teleostomi Gnathostomata Vertebrata Craniata Chordata Deuterostomia Coelomata Bilateria Eumetazoa Metazoa Fungi/Metazoa group Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA TATGGCTTTTTATTCCTATGTGA miRNA* ATGTAGGGATACAAGCCACTAAA mismatches: 1 bulges: 2 |
pre-miRNA
ACAGCTGTCGTGTCTTATGGCTTTTTATTCCTATGTGAAGGTGAACAAGGCTCATGTAGGGATACAAGCCACTAAACACGCAGTCAGAAATCAGCTTT
dot-bracket secondary structure
...((((.(((((.(((((((((..(((((((((((((.(.(......).)))))))))))))).)))))).))))))))))))..............
SIMILARITIES
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miRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
download this record
evidence: array
references
[1] Wienholds E, Kloosterman WP, Miska E, Alvarez-Saavedra E, Berezikov E, de Bruijn E, Horvitz HR, Kauppinen S, Plasterk RH, Science. 309:310-311(2005)., "MicroRNA expression in zebrafish embryonic development"
ACAGCTGTCGTGTCTTATGGCTTTTTATTCCTATGTGAAGGTGAACAAGGCTCATGTAGGGATACAAGCCACTAAACACGCAGTCAGAAATCAGCTTT
dot-bracket secondary structure
...((((.(((((.(((((((((..(((((((((((((.(.(......).)))))))))))))).)))))).))))))))))))..............
SIMILARITIES| miRBase mdo-mir-135a: 0.0000000003 PMRD no hits microPC no hits | UniProt no hits RFAM mir-135: 3e-44 |
MOREmiRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
download this record
evidence: array
references
[1] Wienholds E, Kloosterman WP, Miska E, Alvarez-Saavedra E, Berezikov E, de Bruijn E, Horvitz HR, Kauppinen S, Plasterk RH, Science. 309:310-311(2005)., "MicroRNA expression in zebrafish embryonic development"
