ABOUT THIS RECORDspecies: Danio rerio
miRNA family: mir-135
source: miRBase, original name: dre-mir-135b (MI0003364)
Taxonomy by NCBI:
Danio rerio Danio Cyprinidae Cyprinoidea Cypriniformes Cypriniphysi Otophysi Ostariophysi Otocephala Clupeocephala Elopocephala Teleostei Neopterygii Actinopteri Actinopterygii Euteleostomi Teleostomi Gnathostomata Vertebrata Craniata Chordata Deuterostomia Coelomata Bilateria Eumetazoa Metazoa Fungi/Metazoa group Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA TATGGCTTTTTATTCCTATCTG miRNA* TATAGGGATGGAAGCCATGCA mismatches: 1 bulges: 1 |
pre-miRNA
CTCTTTGCCCCGTATGGCTTTTTATTCCTATCTGAGAATTGCTCAGGACTCATATAGGGATGGAAGCCATGCAGGGCTGGGG
dot-bracket secondary structure
((((..((((.(((((((((((.((((((((.((((..((....))..)))).))))))))))))))))))).)))).))))
SIMILARITIES
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miRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
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CTCTTTGCCCCGTATGGCTTTTTATTCCTATCTGAGAATTGCTCAGGACTCATATAGGGATGGAAGCCATGCAGGGCTGGGG
dot-bracket secondary structure
((((..((((.(((((((((((.((((((((.((((..((....))..)))).))))))))))))))))))).)))).))))
SIMILARITIES| miRBase fru-mir-135b: 0.000001 PMRD no hits microPC no hits | UniProt no hits RFAM mir-135: 4e-40 |
MOREmiRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
download this record
