ABOUT THIS RECORDspecies: Danio rerio
miRNA family: mir-135
source: miRBase, original name: dre-mir-135c-2 (MI0001997)
Taxonomy by NCBI:
Danio rerio Danio Cyprinidae Cyprinoidea Cypriniformes Cypriniphysi Otophysi Ostariophysi Otocephala Clupeocephala Elopocephala Teleostei Neopterygii Actinopteri Actinopterygii Euteleostomi Teleostomi Gnathostomata Vertebrata Craniata Chordata Deuterostomia Coelomata Bilateria Eumetazoa Metazoa Fungi/Metazoa group Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA TATGGCTTTCTATTCCTATGTG miRNA* CATAGGGTTCAAAGCCATTGG mismatches: 4 bulges: 1 |
pre-miRNA
TGCTGTGTTTTATGGCTTTCTATTCCTATGTGATTTTCTTCTGCCGTGTCACATAGGGTTCAAAGCCATTGGGTACAGAG
dot-bracket secondary structure
..(((((..(.((((((((....(((((((((((.............)))))))))))...)))))))).)..)))))..
SIMILARITIES
MORE
miRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
download this record
evidence: cloned
deep sequencing data evidence
references
[1] Chen PY, Manninga H, Slanchev K, Chien M, Russo JJ, Ju J, Sheridan R, John B, Marks DS, Gaidatzis D, Sander C, Zavolan M, Tuschl T, Genes Dev. 19:1288-1293(2005)., "The developmental miRNA profiles of zebrafish as determined by small RNA cloning"
TGCTGTGTTTTATGGCTTTCTATTCCTATGTGATTTTCTTCTGCCGTGTCACATAGGGTTCAAAGCCATTGGGTACAGAG
dot-bracket secondary structure
..(((((..(.((((((((....(((((((((((.............)))))))))))...)))))))).)..)))))..
SIMILARITIES| miRBase dre-mir-135c-1: 4e-40 PMRD no hits microPC no hits | UniProt no hits RFAM mir-135: 6e-39 |
Identical with: dre-mir-135c-1 from miRBase (MNEST034302) |
MOREmiRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
download this record
evidence: cloned
deep sequencing data evidence
references
[1] Chen PY, Manninga H, Slanchev K, Chien M, Russo JJ, Ju J, Sheridan R, John B, Marks DS, Gaidatzis D, Sander C, Zavolan M, Tuschl T, Genes Dev. 19:1288-1293(2005)., "The developmental miRNA profiles of zebrafish as determined by small RNA cloning"
