ABOUT THIS RECORDspecies: Danio rerio
miRNA family: mir-139
source: miRBase, original name: dre-mir-139 (MI0003693)
Taxonomy by NCBI:
Danio rerio Danio Cyprinidae Cyprinoidea Cypriniformes Cypriniphysi Otophysi Ostariophysi Otocephala Clupeocephala Elopocephala Teleostei Neopterygii Actinopteri Actinopterygii Euteleostomi Teleostomi Gnathostomata Vertebrata Craniata Chordata Deuterostomia Coelomata Bilateria Eumetazoa Metazoa Fungi/Metazoa group Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA TCTACAGTGCATGTGTCT miRNA* AGGCAGCGCTGTTGGAAT mismatches: 1 bulges: 2 |
pre-miRNA
CTGTATTCTACAGTGCATGTGTCTCCAGTGTTTCTATGGCGACTGGGGAGGCAGCGCTGTTGGAATAAC
dot-bracket secondary structure
...(((((((((((((.(((.(((((((((((.....))).)))))))).))))))))).)))))))..
SIMILARITIES
MORE
miRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
download this record
evidence: in-situ
references
[1] Wienholds E, Kloosterman WP, Miska E, Alvarez-Saavedra E, Berezikov E, de Bruijn E, Horvitz HR, Kauppinen S, Plasterk RH, Science. 309:310-311(2005)., "MicroRNA expression in zebrafish embryonic development"
CTGTATTCTACAGTGCATGTGTCTCCAGTGTTTCTATGGCGACTGGGGAGGCAGCGCTGTTGGAATAAC
dot-bracket secondary structure
...(((((((((((((.(((.(((((((((((.....))).)))))))).))))))))).)))))))..
SIMILARITIES| miRBase mdo-mir-139: 0.00000000001 PMRD no hits microPC no hits | UniProt no hits RFAM mir-139: 2e-32 |
MOREmiRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
download this record
evidence: in-situ
references
[1] Wienholds E, Kloosterman WP, Miska E, Alvarez-Saavedra E, Berezikov E, de Bruijn E, Horvitz HR, Kauppinen S, Plasterk RH, Science. 309:310-311(2005)., "MicroRNA expression in zebrafish embryonic development"
