ABOUT THIS RECORDspecies: Danio rerio
miRNA family: mir-143
source: miRBase, original name: dre-mir-143-1 (MI0002007)
Taxonomy by NCBI:
Danio rerio Danio Cyprinidae Cyprinoidea Cypriniformes Cypriniphysi Otophysi Ostariophysi Otocephala Clupeocephala Elopocephala Teleostei Neopterygii Actinopteri Actinopterygii Euteleostomi Teleostomi Gnathostomata Vertebrata Craniata Chordata Deuterostomia Coelomata Bilateria Eumetazoa Metazoa Fungi/Metazoa group Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA TGAGATGAAGCACTGTAGCTC miRNA* GGTGCAGTGCTGCATCTCTGG mismatches: 4 bulges: 0 |
pre-miRNA
GATCTACAGTCGTCTGGCCCGCGGTGCAGTGCTGCATCTCTGGTCAACTGGGAGTCTGAGATGAAGCACTGTAGCTCGGGAGGACAACACTGTCAGCTC
dot-bracket secondary structure
((.(((((((.((((..((((.(.(((((((((.((((((.((((......)).)).)))))).))))))))).).)))).))))...))))).)).))
SIMILARITIES
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miRNEST target predictions: none
non-miRNEST targets
HuntMi prediction: true miRNA
additional data
download this record
evidence: cloned
deep sequencing data evidence
references
[1] Chen PY, Manninga H, Slanchev K, Chien M, Russo JJ, Ju J, Sheridan R, John B, Marks DS, Gaidatzis D, Sander C, Zavolan M, Tuschl T, Genes Dev. 19:1288-1293(2005)., "The developmental miRNA profiles of zebrafish as determined by small RNA cloning"
GATCTACAGTCGTCTGGCCCGCGGTGCAGTGCTGCATCTCTGGTCAACTGGGAGTCTGAGATGAAGCACTGTAGCTCGGGAGGACAACACTGTCAGCTC
dot-bracket secondary structure
((.(((((((.((((..((((.(.(((((((((.((((((.((((......)).)).)))))).))))))))).).)))).))))...))))).)).))
SIMILARITIES| miRBase dre-mir-143-2: 2e-51 PMRD no hits microPC no hits | UniProt no hits RFAM mir-143: 4e-50 |
Identical with: dre-mir-143-2 from miRBase (MNEST034315) |
MOREmiRNEST target predictions: none
non-miRNEST targets
HuntMi prediction: true miRNA
additional data
download this record
evidence: cloned
deep sequencing data evidence
references
[1] Chen PY, Manninga H, Slanchev K, Chien M, Russo JJ, Ju J, Sheridan R, John B, Marks DS, Gaidatzis D, Sander C, Zavolan M, Tuschl T, Genes Dev. 19:1288-1293(2005)., "The developmental miRNA profiles of zebrafish as determined by small RNA cloning"
