ABOUT THIS RECORDspecies: Danio rerio
miRNA family: mir-153
source: miRBase, original name: dre-mir-153c (MI0002022)
Taxonomy by NCBI:
Danio rerio Danio Cyprinidae Cyprinoidea Cypriniformes Cypriniphysi Otophysi Ostariophysi Otocephala Clupeocephala Elopocephala Teleostei Neopterygii Actinopteri Actinopterygii Euteleostomi Teleostomi Gnathostomata Vertebrata Craniata Chordata Deuterostomia Coelomata Bilateria Eumetazoa Metazoa Fungi/Metazoa group Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA TTGCATAGTCACAAAAATGATC miRNA* CATTTTTGTGATTTGCAGCT mismatches: 1 bulges: 1 |
pre-miRNA
GATGGAGATCAGTAGGTCCCTGGACGTAGCACACCTCCCAGTGTCATTTTTGTGATTTGCAGCTAGTAGTCTGGGTCCAGTTGCATAGTCACAAAAATGA
TCATTGGTAGGTGTGAGTGCAGCAGGAGTGAGGCTTACCGGATCCTCCATC
dot-bracket secondary structure
((((((((((.(((((((((((...(((.(((((((.(((((((((((((((((((((((((((.(..........).))))))).))))))))))))))
.)))))).)))))))..)))..)))).....)))))))..))).)))))))
SIMILARITIES
MORE
miRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
download this record
evidence: cloned
deep sequencing data evidence
references
[1] Chen PY, Manninga H, Slanchev K, Chien M, Russo JJ, Ju J, Sheridan R, John B, Marks DS, Gaidatzis D, Sander C, Zavolan M, Tuschl T, Genes Dev. 19:1288-1293(2005)., "The developmental miRNA profiles of zebrafish as determined by small RNA cloning"
GATGGAGATCAGTAGGTCCCTGGACGTAGCACACCTCCCAGTGTCATTTTTGTGATTTGCAGCTAGTAGTCTGGGTCCAGTTGCATAGTCACAAAAATGA
TCATTGGTAGGTGTGAGTGCAGCAGGAGTGAGGCTTACCGGATCCTCCATC
dot-bracket secondary structure
((((((((((.(((((((((((...(((.(((((((.(((((((((((((((((((((((((((.(..........).))))))).))))))))))))))
.)))))).)))))))..)))..)))).....)))))))..))).)))))))
SIMILARITIES| miRBase fru-mir-153b: 4e-29 PMRD no hits microPC no hits | UniProt no hits RFAM mir-153: 3e-27 |
MOREmiRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
download this record
evidence: cloned
deep sequencing data evidence
references
[1] Chen PY, Manninga H, Slanchev K, Chien M, Russo JJ, Ju J, Sheridan R, John B, Marks DS, Gaidatzis D, Sander C, Zavolan M, Tuschl T, Genes Dev. 19:1288-1293(2005)., "The developmental miRNA profiles of zebrafish as determined by small RNA cloning"
