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ABOUT THIS RECORD
ID:
MNEST034331
species:
Danio rerio
miRNA family:
mir-181
source:
miRBase, original name:
dre-mir-181b-2
(
MI0001367
)
Taxonomy by NCBI:
Danio rerio
Danio
Cyprinidae
Cyprinoidea
Cypriniformes
Cypriniphysi
Otophysi
Ostariophysi
Otocephala
Clupeocephala
Elopocephala
Teleostei
Neopterygii
Actinopteri
Actinopterygii
Euteleostomi
Teleostomi
Gnathostomata
Vertebrata
Craniata
Chordata
Deuterostomia
Coelomata
Bilateria
Eumetazoa
Metazoa
Fungi/Metazoa group
Eukaryota
cellular organisms
SEQUENCE & STRUCTURE
miRNA
AACATTCATTGCTGTCGGTGGG
miRNA*
CACTGATCAATGAATGCAAA
mismatches:
2
bulges:
2
View larger
pre-miRNA
CTAATGACTGCAATA
AACATTCATTGCTGTCGGTGGG
TTTCTAATAGACACAACT
CACTGATCAATGAATGCAAA
CTGCGGTGCAA
dot-bracket secondary structure
....((((((((...
..(((((((((..(((((((((
((((.....))...))))
))))))))))))))))....
.)))))).)).
SIMILARITIES
miRBase
gga-mir-181b-2
:
2e-17
PMRD
no hits
microPC
no hits
UniProt
no hits
RFAM
mir-181: 0.000005
MORE
miRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction:
true miRNA
additional data
download this record
evidence:
cloned
references
[
1
] Lim LP, Glasner ME, Yekta S, Burge CB, Bartel DP,
Science. 299:1540(2003).
,
"Vertebrate microRNA genes"
[
2
] Chen PY, Manninga H, Slanchev K, Chien M, Russo JJ, Ju J, Sheridan R, John B, Marks DS, Gaidatzis D, Sander C, Zavolan M, Tuschl T,
Genes Dev. 19:1288-1293(2005).
,
"The developmental miRNA profiles of zebrafish as determined by small RNA cloning"