ABOUT THIS RECORDspecies: Danio rerio
miRNA family: mir-182
source: miRBase, original name: dre-mir-182 (MI0001368)
Taxonomy by NCBI:
Danio rerio Danio Cyprinidae Cyprinoidea Cypriniformes Cypriniphysi Otophysi Ostariophysi Otocephala Clupeocephala Elopocephala Teleostei Neopterygii Actinopteri Actinopterygii Euteleostomi Teleostomi Gnathostomata Vertebrata Craniata Chordata Deuterostomia Coelomata Bilateria Eumetazoa Metazoa Fungi/Metazoa group Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA TTTGGCAATGGTAGAACTCACA miRNA* GTTCTAGACTTGCCAACTA mismatches: 2 bulges: 5 |
pre-miRNA
GTATTTGGCAATGGTAGAACTCACACTGGTGAGGTAGTCAGATCCGGTGGTTCTAGACTTGCCAACTA
dot-bracket secondary structure
....(((((((.(.((((((...(((((((((.....)))...))))))))))))..))))))))...
SIMILARITIES
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miRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
download this record
evidence: PCR, cloned
references
[1] Lim LP, Glasner ME, Yekta S, Burge CB, Bartel DP, Science. 299:1540(2003)., "Vertebrate microRNA genes"
[2] Chen PY, Manninga H, Slanchev K, Chien M, Russo JJ, Ju J, Sheridan R, John B, Marks DS, Gaidatzis D, Sander C, Zavolan M, Tuschl T, Genes Dev. 19:1288-1293(2005)., "The developmental miRNA profiles of zebrafish as determined by small RNA cloning"
GTATTTGGCAATGGTAGAACTCACACTGGTGAGGTAGTCAGATCCGGTGGTTCTAGACTTGCCAACTA
dot-bracket secondary structure
....(((((((.(.((((((...(((((((((.....)))...))))))))))))..))))))))...
SIMILARITIES| miRBase cfa-mir-182: 4e-24 PMRD no hits microPC no hits | UniProt no hits RFAM mir-182: 7e-23 |
MOREmiRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
download this record
evidence: PCR, cloned
references
[1] Lim LP, Glasner ME, Yekta S, Burge CB, Bartel DP, Science. 299:1540(2003)., "Vertebrate microRNA genes"
[2] Chen PY, Manninga H, Slanchev K, Chien M, Russo JJ, Ju J, Sheridan R, John B, Marks DS, Gaidatzis D, Sander C, Zavolan M, Tuschl T, Genes Dev. 19:1288-1293(2005)., "The developmental miRNA profiles of zebrafish as determined by small RNA cloning"
