ABOUT THIS RECORDspecies: Danio rerio
miRNA family: mir-184
source: miRBase, original name: dre-mir-184-2 (MI0003243)
Taxonomy by NCBI:
Danio rerio Danio Cyprinidae Cyprinoidea Cypriniformes Cypriniphysi Otophysi Ostariophysi Otocephala Clupeocephala Elopocephala Teleostei Neopterygii Actinopteri Actinopterygii Euteleostomi Teleostomi Gnathostomata Vertebrata Craniata Chordata Deuterostomia Coelomata Bilateria Eumetazoa Metazoa Fungi/Metazoa group Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA TGGACGGAGAACTGATAAGGGC miRNA* CCTTATCACTTTTCCAGCCCAGCTAACGAT mismatches: 5 bulges: 8 |
pre-miRNA
CACATCTCCTTATCACTTTTCCAGCCCAGCTAACGATGGTGAATCCGTTGGACGGAGAACTGATAAGGGCATGTGGCTG
dot-bracket secondary structure
(((((.(((((((((.((((((.((...))...((((((.....))))))...)))))).))))))))).)))))....
SIMILARITIES
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miRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
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deep sequencing data evidence
CACATCTCCTTATCACTTTTCCAGCCCAGCTAACGATGGTGAATCCGTTGGACGGAGAACTGATAAGGGCATGTGGCTG
dot-bracket secondary structure
(((((.(((((((((.((((((.((...))...((((((.....))))))...)))))).))))))))).)))))....
SIMILARITIES| miRBase fru-mir-184: 1e-21 PMRD no hits microPC no hits | UniProt no hits RFAM mir-184: 2e-38 |
MOREmiRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
download this record
deep sequencing data evidence
