miRNEST 2.0, an integrative microRNA resource :: Browse
Home
Browse miRNAs
Deep-seq predictions
Mirtrons
miRNA genes
Degradomes
Download
Upload
Contact
Back to search results
ABOUT THIS RECORD
ID:
MNEST034337
species:
Danio rerio
miRNA family:
mir-187
source:
miRBase, original name:
dre-mir-187
(
MI0001370
)
Taxonomy by NCBI:
Danio rerio
Danio
Cyprinidae
Cyprinoidea
Cypriniformes
Cypriniphysi
Otophysi
Ostariophysi
Otocephala
Clupeocephala
Elopocephala
Teleostei
Neopterygii
Actinopteri
Actinopterygii
Euteleostomi
Teleostomi
Gnathostomata
Vertebrata
Craniata
Chordata
Deuterostomia
Coelomata
Bilateria
Eumetazoa
Metazoa
Fungi/Metazoa group
Eukaryota
cellular organisms
SEQUENCE & STRUCTURE
miRNA
TCGTGTCTTGTGTTGCAGCC
miRNA*
CTGCAACACAGGACATGGGA
mismatches:
2
bulges:
0
View larger
pre-miRNA
TGACCTGTGGCTGGGCCAGGGG
CTGCAACACAGGACATGGGA
GCTGTCTCTCACTCCCGC
TCGTGTCTTGTGTTGCAGCC
AGTGGAACG
dot-bracket secondary structure
............(..(((..((
((((((((((((((((((((
(.((.....)))))))..
..))))))))))))))))))
..)))..).
SIMILARITIES
miRBase
fru-mir-187
:
5e-18
PMRD
no hits
microPC
no hits
UniProt
no hits
RFAM
mir-187: 3e-44
MORE
miRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction:
true miRNA
additional data
download this record
evidence:
PCR, cloned
references
[
1
] Lim LP, Glasner ME, Yekta S, Burge CB, Bartel DP,
Science. 299:1540(2003).
,
"Vertebrate microRNA genes"
[
2
] Chen PY, Manninga H, Slanchev K, Chien M, Russo JJ, Ju J, Sheridan R, John B, Marks DS, Gaidatzis D, Sander C, Zavolan M, Tuschl T,
Genes Dev. 19:1288-1293(2005).
,
"The developmental miRNA profiles of zebrafish as determined by small RNA cloning"