ABOUT THIS RECORDspecies: Danio rerio
miRNA family: mir-190
source: miRBase, original name: dre-mir-190b (MI0004764)
Taxonomy by NCBI:
Danio rerio Danio Cyprinidae Cyprinoidea Cypriniformes Cypriniphysi Otophysi Ostariophysi Otocephala Clupeocephala Elopocephala Teleostei Neopterygii Actinopteri Actinopterygii Euteleostomi Teleostomi Gnathostomata Vertebrata Craniata Chordata Deuterostomia Coelomata Bilateria Eumetazoa Metazoa Fungi/Metazoa group Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA TGATATGTTTGATATTCGGTTG miRNA* ACTAAATATCAGACATATTCCT mismatches: 4 bulges: 0 |
pre-miRNA
TGTTACAGACTATGTGATATGTTTGATATTCGGTTGCTTTCTTTATATCATGTCAACTAAATATCAGACATATTCCTATAGACTGTGACA
dot-bracket secondary structure
.(((((((.(((((..((((((((((((((..(((((..............).))))..))))))))))))))..).)))).))))))).
SIMILARITIES
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miRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
download this record
evidence: cloned, Northern
deep sequencing data evidence
references
[1] Kloosterman WP, Steiner FA, Berezikov E, de Bruijn E, van de Belt J, Verheul M, Cuppen E, Plasterk RH, Nucleic Acids Res. 34:2558-2569(2006)., "Cloning and expression of new microRNAs from zebrafish"
TGTTACAGACTATGTGATATGTTTGATATTCGGTTGCTTTCTTTATATCATGTCAACTAAATATCAGACATATTCCTATAGACTGTGACA
dot-bracket secondary structure
.(((((((.(((((..((((((((((((((..(((((..............).))))..))))))))))))))..).)))).))))))).
SIMILARITIES| miRBase cfa-mir-190b: 0.0003 PMRD no hits microPC no hits | UniProt no hits RFAM mir-190: 8e-45 |
MOREmiRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
download this record
evidence: cloned, Northern
deep sequencing data evidence
references
[1] Kloosterman WP, Steiner FA, Berezikov E, de Bruijn E, van de Belt J, Verheul M, Cuppen E, Plasterk RH, Nucleic Acids Res. 34:2558-2569(2006)., "Cloning and expression of new microRNAs from zebrafish"
