ABOUT THIS RECORDspecies: Danio rerio
miRNA family: mir-196
source: miRBase, original name: dre-mir-196d (MI0010853)
Taxonomy by NCBI:
Danio rerio Danio Cyprinidae Cyprinoidea Cypriniformes Cypriniphysi Otophysi Ostariophysi Otocephala Clupeocephala Elopocephala Teleostei Neopterygii Actinopteri Actinopterygii Euteleostomi Teleostomi Gnathostomata Vertebrata Craniata Chordata Deuterostomia Coelomata Bilateria Eumetazoa Metazoa Fungi/Metazoa group Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA TAGGTAGTTTTATGTTGTTGGG miRNA* CCGCAACACGAAACTGTCTTAA mismatches: 6 bulges: 0 |
pre-miRNA
AGTGATTTAGGTAGTTTTATGTTGTTGGGCTCTATTTTATATCCCCGCAACACGAAACTGTCTTAATTGCCT
dot-bracket secondary structure
.(..(((.((..(((((..((((((.(((.............))).))))))..)))))..)).)))..)..
SIMILARITIES
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miRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
download this record
evidence: 454
deep sequencing data evidence
references
[1] Soares AR, Pereira PM, Santos B, Egas C, Gomes AC, Arrais J, Oliveira JL, Moura GR, Santos MA, BMC Genomics. 10:195(2009)., "Parallel DNA pyrosequencing unveils new zebrafish microRNAs"
AGTGATTTAGGTAGTTTTATGTTGTTGGGCTCTATTTTATATCCCCGCAACACGAAACTGTCTTAATTGCCT
dot-bracket secondary structure
.(..(((.((..(((((..((((((.(((.............))).))))))..)))))..)).)))..)..
SIMILARITIES| miRBase fru-mir-196a-2: 0.00000001 PMRD no hits microPC no hits | UniProt no hits RFAM mir-196: 8e-32 |
MOREmiRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
download this record
evidence: 454
deep sequencing data evidence
references
[1] Soares AR, Pereira PM, Santos B, Egas C, Gomes AC, Arrais J, Oliveira JL, Moura GR, Santos MA, BMC Genomics. 10:195(2009)., "Parallel DNA pyrosequencing unveils new zebrafish microRNAs"
