ABOUT THIS RECORDspecies: Danio rerio
miRNA family: mir-430
source: miRBase, original name: dre-mir-430c-3 (MI0002080)
Taxonomy by NCBI:
Danio rerio Danio Cyprinidae Cyprinoidea Cypriniformes Cypriniphysi Otophysi Ostariophysi Otocephala Clupeocephala Elopocephala Teleostei Neopterygii Actinopteri Actinopterygii Euteleostomi Teleostomi Gnathostomata Vertebrata Craniata Chordata Deuterostomia Coelomata Bilateria Eumetazoa Metazoa Fungi/Metazoa group Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA TAAGTGCTTCTCTTTGGGGTAG miRNA* ACTTCAAACAGGAGCATTGATT mismatches: 4 bulges: 0 |
pre-miRNA
CACATTAAGATCACTTCAAACAGGAGCATTGATTTGTCCTTTGTTCATAAGTGCTTCTCTTTGGGGTAGTTTTAATAAG
dot-bracket secondary structure
...((((((((.((((((((.(((((((((....((.........))..))))))))).)))))))).))))))))...
SIMILARITIES
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miRNEST target predictions: none
non-miRNEST targets
HuntMi prediction: true miRNA
additional data
download this record
evidence: cloned
deep sequencing data evidence
references
[1] Chen PY, Manninga H, Slanchev K, Chien M, Russo JJ, Ju J, Sheridan R, John B, Marks DS, Gaidatzis D, Sander C, Zavolan M, Tuschl T, Genes Dev. 19:1288-1293(2005)., "The developmental miRNA profiles of zebrafish as determined by small RNA cloning"
[2] Giraldez AJ, Cinalli RM, Glasner ME, Enright AJ, Thomson JM, Baskerville S, Hammond SM, Bartel DP, Schier AF, Science. 308:833-838(2005)., "MicroRNAs regulate brain morphogenesis in zebrafish"
CACATTAAGATCACTTCAAACAGGAGCATTGATTTGTCCTTTGTTCATAAGTGCTTCTCTTTGGGGTAGTTTTAATAAG
dot-bracket secondary structure
...((((((((.((((((((.(((((((((....((.........))..))))))))).)))))))).))))))))...
SIMILARITIES| miRBase dre-mir-430c-1: 1e-39 PMRD no hits microPC no hits | UniProt no hits RFAM miR-430: 1e-37 |
Identical with: dre-mir-430c-4 from miRBase (MNEST034463) |
MOREmiRNEST target predictions: none
non-miRNEST targets
HuntMi prediction: true miRNA
additional data
download this record
evidence: cloned
deep sequencing data evidence
references
[1] Chen PY, Manninga H, Slanchev K, Chien M, Russo JJ, Ju J, Sheridan R, John B, Marks DS, Gaidatzis D, Sander C, Zavolan M, Tuschl T, Genes Dev. 19:1288-1293(2005)., "The developmental miRNA profiles of zebrafish as determined by small RNA cloning"
[2] Giraldez AJ, Cinalli RM, Glasner ME, Enright AJ, Thomson JM, Baskerville S, Hammond SM, Bartel DP, Schier AF, Science. 308:833-838(2005)., "MicroRNAs regulate brain morphogenesis in zebrafish"
