miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: Browse

Back to search results



ABOUT THIS RECORD

ID: MNEST034466
species: Danio rerio
miRNA family: mir-430
source: miRBase, original name: dre-mir-430c-7 (MI0002087)

Taxonomy by NCBI:
Danio rerio Danio Cyprinidae Cyprinoidea Cypriniformes Cypriniphysi Otophysi Ostariophysi Otocephala Clupeocephala Elopocephala Teleostei Neopterygii Actinopteri Actinopterygii Euteleostomi Teleostomi Gnathostomata Vertebrata Craniata Chordata Deuterostomia Coelomata Bilateria Eumetazoa Metazoa Fungi/Metazoa group Eukaryota cellular organisms






SEQUENCE & STRUCTURE
miRNA
TAAGTGCTTCTCTTTGGGGTAG

miRNA*
ACTTCAAACAGGAGCATTGATT

mismatches: 4
bulges: 0

View larger
pre-miRNA
ATTAAGATCACTTCAAACAGGAGCATTGATTTGTCCTTTGTTCATAAGTGCTTCTCTTTGGGGTAGTTTTAAT

dot-bracket secondary structure
((((((((.((((((((.(((((((((....((.........))..))))))))).)))))))).))))))))


SIMILARITIES
miRBase dre-mir-430c-1: 5e-36

PMRD no hits

microPC no hits
UniProt no hits

RFAM miR-430: 8e-35

Identical with: dre-mir-430c-9 from miRBase (MNEST034468)

MORE

miRNEST target predictions: none
non-miRNEST targets
HuntMi prediction: true miRNA
additional data
download this record
evidence: cloned
deep sequencing data evidence

references

[1] Chen PY, Manninga H, Slanchev K, Chien M, Russo JJ, Ju J, Sheridan R, John B, Marks DS, Gaidatzis D, Sander C, Zavolan M, Tuschl T, Genes Dev. 19:1288-1293(2005)., "The developmental miRNA profiles of zebrafish as determined by small RNA cloning"
[2] Giraldez AJ, Cinalli RM, Glasner ME, Enright AJ, Thomson JM, Baskerville S, Hammond SM, Bartel DP, Schier AF, Science. 308:833-838(2005)., "MicroRNAs regulate brain morphogenesis in zebrafish"




Liczniki na strone;