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ABOUT THIS RECORD
ID:
MNEST034468
species:
Danio rerio
miRNA family:
mir-430
source:
miRBase, original name:
dre-mir-430c-9
(
MI0002089
)
Taxonomy by NCBI:
Danio rerio
Danio
Cyprinidae
Cyprinoidea
Cypriniformes
Cypriniphysi
Otophysi
Ostariophysi
Otocephala
Clupeocephala
Elopocephala
Teleostei
Neopterygii
Actinopteri
Actinopterygii
Euteleostomi
Teleostomi
Gnathostomata
Vertebrata
Craniata
Chordata
Deuterostomia
Coelomata
Bilateria
Eumetazoa
Metazoa
Fungi/Metazoa group
Eukaryota
cellular organisms
SEQUENCE & STRUCTURE
miRNA
TAAGTGCTTCTCTTTGGGGTAG
miRNA*
ACTTCAAACAGGAGCATTGATT
mismatches:
4
bulges:
0
View larger
pre-miRNA
ATTAAGATC
ACTTCAAACAGGAGCATTGATT
TGTCCTTTGTTCA
TAAGTGCTTCTCTTTGGGGTAG
TTTTAATAAGGACAAG
dot-bracket secondary structure
((((((((.
((((((((.(((((((((....
((.........))
..))))))))).)))))))).)
))))))).........
SIMILARITIES
miRBase
dre-mir-430c-10
:
2e-41
PMRD
no hits
microPC
no hits
UniProt
no hits
RFAM
miR-430: 6e-36
Identical with:
dre-mir-430c-20
from miRBase (
MNEST034460
)
MORE
miRNEST target predictions: none
non-miRNEST targets
HuntMi prediction:
true miRNA
additional data
download this record
evidence:
cloned
deep sequencing data evidence
references
[
1
] Chen PY, Manninga H, Slanchev K, Chien M, Russo JJ, Ju J, Sheridan R, John B, Marks DS, Gaidatzis D, Sander C, Zavolan M, Tuschl T,
Genes Dev. 19:1288-1293(2005).
,
"The developmental miRNA profiles of zebrafish as determined by small RNA cloning"
[
2
] Giraldez AJ, Cinalli RM, Glasner ME, Enright AJ, Thomson JM, Baskerville S, Hammond SM, Bartel DP, Schier AF,
Science. 308:833-838(2005).
,
"MicroRNAs regulate brain morphogenesis in zebrafish"