ABOUT THIS RECORDspecies: Danio rerio
miRNA family: mir-451
source: miRBase, original name: dre-mir-451 (MI0001732)
Taxonomy by NCBI:
Danio rerio Danio Cyprinidae Cyprinoidea Cypriniformes Cypriniphysi Otophysi Ostariophysi Otocephala Clupeocephala Elopocephala Teleostei Neopterygii Actinopteri Actinopterygii Euteleostomi Teleostomi Gnathostomata Vertebrata Craniata Chordata Deuterostomia Coelomata Bilateria Eumetazoa Metazoa Fungi/Metazoa group Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA AAACCGTTACCATTACTGAGTT miRNA* TTTAGTAATGGTAAGGGTTCTG mismatches: 6 bulges: 0 |
pre-miRNA
AGAGGCGGCGAAACCGTTACCATTACTGAGTTTAGTAATGGTAAGGGTTCTGCTGCCTTT
dot-bracket secondary structure
((((((((((.((((.((((((((((((....)))))))))))).)))).))))))))))
SIMILARITIES
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miRNEST target predictions: none
non-miRNEST targets
HuntMi prediction: true miRNA
additional data
download this record
evidence: cloned
references
[1] Chen PY, Manninga H, Slanchev K, Chien M, Russo JJ, Ju J, Sheridan R, John B, Marks DS, Gaidatzis D, Sander C, Zavolan M, Tuschl T, Genes Dev. 19:1288-1293(2005)., "The developmental miRNA profiles of zebrafish as determined by small RNA cloning"
[2] Altuvia Y, Landgraf P, Lithwick G, Elefant N, Pfeffer S, Aravin A, Brownstein MJ, Tuschl T, Margalit H, Nucleic Acids Res. 33:2697-2706(2005)., "Clustering and conservation patterns of human microRNAs"
AGAGGCGGCGAAACCGTTACCATTACTGAGTTTAGTAATGGTAAGGGTTCTGCTGCCTTT
dot-bracket secondary structure
((((((((((.((((.((((((((((((....)))))))))))).)))).))))))))))
SIMILARITIES| miRBase xtr-mir-451: 3e-18 PMRD no hits microPC no hits | UniProt no hits RFAM mir-451: 4e-27 |
MOREmiRNEST target predictions: none
non-miRNEST targets
HuntMi prediction: true miRNA
additional data
download this record
evidence: cloned
references
[1] Chen PY, Manninga H, Slanchev K, Chien M, Russo JJ, Ju J, Sheridan R, John B, Marks DS, Gaidatzis D, Sander C, Zavolan M, Tuschl T, Genes Dev. 19:1288-1293(2005)., "The developmental miRNA profiles of zebrafish as determined by small RNA cloning"
[2] Altuvia Y, Landgraf P, Lithwick G, Elefant N, Pfeffer S, Aravin A, Brownstein MJ, Tuschl T, Margalit H, Nucleic Acids Res. 33:2697-2706(2005)., "Clustering and conservation patterns of human microRNAs"
