ABOUT THIS RECORDspecies: Danio rerio
miRNA family: mir-489
source: miRBase, original name: dre-mir-489 (MI0003256)
Taxonomy by NCBI:
Danio rerio Danio Cyprinidae Cyprinoidea Cypriniformes Cypriniphysi Otophysi Ostariophysi Otocephala Clupeocephala Elopocephala Teleostei Neopterygii Actinopteri Actinopterygii Euteleostomi Teleostomi Gnathostomata Vertebrata Craniata Chordata Deuterostomia Coelomata Bilateria Eumetazoa Metazoa Fungi/Metazoa group Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA AGTGACATCATATGTACGGCTGC miRNA* GGTCGTATGTATGACGTCATTTA mismatches: 3 bulges: 0 |
pre-miRNA
ACTGACTTGAGTGGTGGCCTGGTGGTCGTATGTATGACGTCATTTACTTCAAAGTTTGGAGTGACATCATATGTACGGCTGCTAAACTGCTACATGGCTC
ATCA
dot-bracket secondary structure
.......(((((.(((((.(((..(((((((((((((.((((((((((....)))...))))))).)))))))))))))..)))....)))))...))))
)...
SIMILARITIES
MORE
miRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
download this record
evidence: cloned, Northern
references
[1] Kloosterman WP, Steiner FA, Berezikov E, de Bruijn E, van de Belt J, Verheul M, Cuppen E, Plasterk RH, Nucleic Acids Res. 34:2558-2569(2006)., "Cloning and expression of new microRNAs from zebrafish"
ACTGACTTGAGTGGTGGCCTGGTGGTCGTATGTATGACGTCATTTACTTCAAAGTTTGGAGTGACATCATATGTACGGCTGCTAAACTGCTACATGGCTC
ATCA
dot-bracket secondary structure
.......(((((.(((((.(((..(((((((((((((.((((((((((....)))...))))))).)))))))))))))..)))....)))))...))))
)...
SIMILARITIES| miRBase fru-mir-489: 2e-30 PMRD no hits microPC no hits | UniProt no hits RFAM mir-489: 8e-36 |
MOREmiRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
download this record
evidence: cloned, Northern
references
[1] Kloosterman WP, Steiner FA, Berezikov E, de Bruijn E, van de Belt J, Verheul M, Cuppen E, Plasterk RH, Nucleic Acids Res. 34:2558-2569(2006)., "Cloning and expression of new microRNAs from zebrafish"
