ABOUT THIS RECORDspecies: Danio rerio
miRNA family: mir-1388
source: miRBase, original name: dre-mir-1388 (MI0010837)
Taxonomy by NCBI:
Danio rerio Danio Cyprinidae Cyprinoidea Cypriniformes Cypriniphysi Otophysi Ostariophysi Otocephala Clupeocephala Elopocephala Teleostei Neopterygii Actinopteri Actinopterygii Euteleostomi Teleostomi Gnathostomata Vertebrata Craniata Chordata Deuterostomia Coelomata Bilateria Eumetazoa Metazoa Fungi/Metazoa group Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA ATCTCAGGTTCGTCAGCCCATG miRNA* AGGACTGTCCAACCTGAGAATG mismatches: 6 bulges: 0 |
pre-miRNA
TGATGGATGAGCAGTGCTTTCCAGGACTGTCCAACCTGAGAATGCTTGAGTTTTGGTCAATCTCAGGTTCGTCAGCCCATGAAAAACTGTCTCGCTCAAA
GCC
dot-bracket secondary structure
...((..((((((((..((((..((.(((.(.(((((((((.((((........)).)).))))))))).).))).))..)))).)))).))))..))..
...
SIMILARITIES
MORE
miRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
download this record
evidence: 454
references
[1] Soares AR, Pereira PM, Santos B, Egas C, Gomes AC, Arrais J, Oliveira JL, Moura GR, Santos MA, BMC Genomics. 10:195(2009)., "Parallel DNA pyrosequencing unveils new zebrafish microRNAs"
TGATGGATGAGCAGTGCTTTCCAGGACTGTCCAACCTGAGAATGCTTGAGTTTTGGTCAATCTCAGGTTCGTCAGCCCATGAAAAACTGTCTCGCTCAAA
GCC
dot-bracket secondary structure
...((..((((((((..((((..((.(((.(.(((((((((.((((........)).)).))))))))).).))).))..)))).)))).))))..))..
...
SIMILARITIES| miRBase oan-mir-1388: 0.0000000003 PMRD no hits microPC no hits | UniProt no hits RFAM mir-1388: 2e-52 |
MOREmiRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
download this record
evidence: 454
references
[1] Soares AR, Pereira PM, Santos B, Egas C, Gomes AC, Arrais J, Oliveira JL, Moura GR, Santos MA, BMC Genomics. 10:195(2009)., "Parallel DNA pyrosequencing unveils new zebrafish microRNAs"
