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ABOUT THIS RECORD
ID:
MNEST034510
species:
Danio rerio
source:
miRBase, original name:
dre-mir-2185
(
MI0010835
)
Taxonomy by NCBI:
Danio rerio
Danio
Cyprinidae
Cyprinoidea
Cypriniformes
Cypriniphysi
Otophysi
Ostariophysi
Otocephala
Clupeocephala
Elopocephala
Teleostei
Neopterygii
Actinopteri
Actinopterygii
Euteleostomi
Teleostomi
Gnathostomata
Vertebrata
Craniata
Chordata
Deuterostomia
Coelomata
Bilateria
Eumetazoa
Metazoa
Fungi/Metazoa group
Eukaryota
cellular organisms
SEQUENCE & STRUCTURE
miRNA
CGGTGCAGGACTCCGCGGCTC
miRNA*
GCCGCGATCAGCTGCACCAGC
mismatches:
6
bulges:
0
View larger
pre-miRNA
CAGGTTCTCTGGCTTGACGTCC
CGGTGCAGGACTCCGCGGCTC
TCGCAGTGTTTCAGA
GCCGCGATCAGCTGCACCAGC
ACTTTCTTGGCCAGACGCT
dot-bracket secondary structure
..(((..(((((((.((.((.(
.(((((((.....((((((((
(...........)))
)))))).....))))))).).
))..))..))))))).)))
SIMILARITIES
miRBase
no hits
PMRD
no hits
microPC
no hits
UniProt
sp|Q9SEZ7|CIPKG_ARATH: 0.0001
RFAM
no hits
MORE
miRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction:
true miRNA
additional data
download this record
evidence:
454
references
[
1
] Soares AR, Pereira PM, Santos B, Egas C, Gomes AC, Arrais J, Oliveira JL, Moura GR, Santos MA,
BMC Genomics. 10:195(2009).
,
"Parallel DNA pyrosequencing unveils new zebrafish microRNAs"