ABOUT THIS RECORDspecies: Tetraodon nigroviridis
miRNA family: mir-10
source: miRBase, original name: tni-mir-10d (MI0004966)
SEQUENCE & STRUCTURE| miRNA TACCCTGTAGAACCGAATGTGTGTG miRNA* CACAGATTGGGTTCTAGGGGAGTC mismatches: 5 bulges: 1 |
pre-miRNA
GCCGGTGAGGTGCTCGTCGTCTATACATACCCTGTAGAACCGAATGTGTGTGCAGCTGACTTGATCACAGATTGGGTTCTAGGGGAGTCTATGGGCGCTG
AATAATCATCGATGAACGGC
dot-bracket secondary structure
((((.((((((..(((.((((((((.((.((((.(((((((.(((.((((..(((.....)))..)))).))).))))))))))).)).)))))))).))
)...))).))).....))))
SIMILARITIES
MORE
miRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
download this record
references
[1] Woltering JM, Durston AJ, Nat Genet. 38:601-602(2006)., "The zebrafish hoxDb cluster has been reduced to a single microRNA"
GCCGGTGAGGTGCTCGTCGTCTATACATACCCTGTAGAACCGAATGTGTGTGCAGCTGACTTGATCACAGATTGGGTTCTAGGGGAGTCTATGGGCGCTG
AATAATCATCGATGAACGGC
dot-bracket secondary structure
((((.((((((..(((.((((((((.((.((((.(((((((.(((.((((..(((.....)))..)))).))).))))))))))).)).)))))))).))
)...))).))).....))))
SIMILARITIES| miRBase fru-mir-10d: 1e-44 PMRD no hits microPC no hits | UniProt no hits RFAM mir-10: 1e-22 |
MOREmiRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
download this record
references
[1] Woltering JM, Durston AJ, Nat Genet. 38:601-602(2006)., "The zebrafish hoxDb cluster has been reduced to a single microRNA"
