ABOUT THIS RECORDspecies: Strongylocentrotus purpuratus
miRNA family: let-7
source: miRBase, original name: spu-let-7 (MI0010185)
Taxonomy by NCBI:
Strongylocentrotus purpuratus Strongylocentrotus Strongylocentrotidae Echinoida Echinacea Euechinoidea Echinoidea Echinozoa Eleutherozoa Echinodermata Deuterostomia Coelomata Bilateria Eumetazoa Metazoa Fungi/Metazoa group Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA TGAGGTAGTAGGTTATATAGTT miRNA* CTATACAGCCTGCTAGCTTTCC mismatches: 3 bulges: 0 |
pre-miRNA
GTACATGAATGGTCCTTACGTGAGGTAGTAGGTTATATAGTTTGGAGATACACTCAATGGCGATAGCTATACAGCCTGCTAGCTTTCCTTGGGCCATTCA
C
dot-bracket secondary structure
.....((((((((((......(((.(((((((((.(((((((..(((.....))).........))))))).))))))))).))).....))))))))))
.
SIMILARITIES
MORE
miRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
download this record
evidence: 454
references
[1] Wheeler BM, Heimberg AM, Moy VN, Sperling EA, Holstein TW, Heber S, Peterson KJ, Evol Dev. 11:50-68(2009)., "The deep evolution of metazoan microRNAs"
GTACATGAATGGTCCTTACGTGAGGTAGTAGGTTATATAGTTTGGAGATACACTCAATGGCGATAGCTATACAGCCTGCTAGCTTTCCTTGGGCCATTCA
C
dot-bracket secondary structure
.....((((((((((......(((.(((((((((.(((((((..(((.....))).........))))))).))))))))).))).....))))))))))
.
SIMILARITIES| miRBase mmu-let-7a-2: 0.000000000005 PMRD no hits microPC no hits | UniProt no hits RFAM let-7: 1e-37 |
MOREmiRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
download this record
evidence: 454
references
[1] Wheeler BM, Heimberg AM, Moy VN, Sperling EA, Holstein TW, Heber S, Peterson KJ, Evol Dev. 11:50-68(2009)., "The deep evolution of metazoan microRNAs"
