ABOUT THIS RECORDspecies: Strongylocentrotus purpuratus
miRNA family: mir-33
source: miRBase, original name: spu-mir-33 (MI0010194)
Taxonomy by NCBI:
Strongylocentrotus purpuratus Strongylocentrotus Strongylocentrotidae Echinoida Echinacea Euechinoidea Echinoidea Echinozoa Eleutherozoa Echinodermata Deuterostomia Coelomata Bilateria Eumetazoa Metazoa Fungi/Metazoa group Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA GTGCATTGTCGTTGCATTGCAT miRNA* GTAGTGCAAGAACAGTGCAATA mismatches: 3 bulges: 0 |
pre-miRNA
ATCTCTTTCTTGTAGCCATGGTGCATTGTCGTTGCATTGCATCTTTCTCTATACCCCTATGTAGTGCAAGAACAGTGCAATATGGAGGCAAGATAAGCAG
C
dot-bracket secondary structure
..(((((((((((..(((((.((((((((..(((((((((((................)))))))))))..)))))))).)))))..)))))).))).))
.
SIMILARITIES
MORE
miRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
download this record
evidence: 454
references
[1] Wheeler BM, Heimberg AM, Moy VN, Sperling EA, Holstein TW, Heber S, Peterson KJ, Evol Dev. 11:50-68(2009)., "The deep evolution of metazoan microRNAs"
ATCTCTTTCTTGTAGCCATGGTGCATTGTCGTTGCATTGCATCTTTCTCTATACCCCTATGTAGTGCAAGAACAGTGCAATATGGAGGCAAGATAAGCAG
C
dot-bracket secondary structure
..(((((((((((..(((((.((((((((..(((((((((((................)))))))))))..)))))))).)))))..)))))).))).))
.
SIMILARITIES| miRBase lgi-mir-33: 0.00008 PMRD no hits microPC no hits | UniProt no hits RFAM mir-33: 5e-28 |
MOREmiRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
download this record
evidence: 454
references
[1] Wheeler BM, Heimberg AM, Moy VN, Sperling EA, Holstein TW, Heber S, Peterson KJ, Evol Dev. 11:50-68(2009)., "The deep evolution of metazoan microRNAs"
