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ABOUT THIS RECORD
ID:
MNEST034817
species:
Strongylocentrotus purpuratus
miRNA family:
mir-9
source:
miRBase, original name:
spu-mir-79
(
MI0010197
)
Taxonomy by NCBI:
Strongylocentrotus purpuratus
Strongylocentrotus
Strongylocentrotidae
Echinoida
Echinacea
Euechinoidea
Echinoidea
Echinozoa
Eleutherozoa
Echinodermata
Deuterostomia
Coelomata
Bilateria
Eumetazoa
Metazoa
Fungi/Metazoa group
Eukaryota
cellular organisms
SEQUENCE & STRUCTURE
miRNA
ATAAAGCTAGGTTACCAAAGAT
miRNA*
CTTTGGTTATCTAGCTGTATGAGTGA
mismatches:
4
bulges:
4
View larger
pre-miRNA
TTCATACTGACTCTGCTTTTCT
CTTTGGTTATCTAGCTGTATGAGTGA
TGTCAATGCATC
ATAAAGCTAGGTTACCAAAGAT
AAGTGCCTGTTGTCACAT
G
dot-bracket secondary structure
.......((((.(.((.(((.(
(((((((.((((((((......((((
(((....)))))
))..)))))))).)))))))).
))).))..)..))))...
.
SIMILARITIES
miRBase
spu-mir-9
:
5e-52
PMRD
no hits
microPC
no hits
UniProt
no hits
RFAM
mir-9: 0.000000000000006
MORE
miRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction:
true miRNA
additional data
download this record
evidence:
454
references
[
1
] Wheeler BM, Heimberg AM, Moy VN, Sperling EA, Holstein TW, Heber S, Peterson KJ,
Evol Dev. 11:50-68(2009).
,
"The deep evolution of metazoan microRNAs"