ABOUT THIS RECORDspecies: Strongylocentrotus purpuratus
miRNA family: mir-125
source: miRBase, original name: spu-mir-125 (MI0010203)
Taxonomy by NCBI:
Strongylocentrotus purpuratus Strongylocentrotus Strongylocentrotidae Echinoida Echinacea Euechinoidea Echinoidea Echinozoa Eleutherozoa Echinodermata Deuterostomia Coelomata Bilateria Eumetazoa Metazoa Fungi/Metazoa group Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA TCCCTGAGACCCTAACTTGTGA miRNA* ACAGGTTGGTATCTCAGGAATT mismatches: 4 bulges: 0 |
pre-miRNA
AAAGAGAGACTGCCCCCCAAATCCCTGAGACCCTAACTTGTGATGTGCTTTTATCAAATCACACAGGTTGGTATCTCAGGAATTTGGTGGGCGTGTCATG
C
dot-bracket secondary structure
.......((((((((.((((((.(((((((..((((((((((.((..............))))))))))))..))))))).)))))).))))).)))...
.
SIMILARITIES
MORE
miRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
download this record
evidence: 454
references
[1] Campo-Paysaa F, Semon M, Cameron RA, Peterson KJ, Schubert M, Evol Dev. 13:15-27(2011)., "microRNA complements in deuterostomes: origin and evolution of microRNAs"
[2] Wheeler BM, Heimberg AM, Moy VN, Sperling EA, Holstein TW, Heber S, Peterson KJ, Evol Dev. 11:50-68(2009)., "The deep evolution of metazoan microRNAs"
AAAGAGAGACTGCCCCCCAAATCCCTGAGACCCTAACTTGTGATGTGCTTTTATCAAATCACACAGGTTGGTATCTCAGGAATTTGGTGGGCGTGTCATG
C
dot-bracket secondary structure
.......((((((((.((((((.(((((((..((((((((((.((..............))))))))))))..))))))).)))))).))))).)))...
.
SIMILARITIES| miRBase xtr-mir-125b-1: 0.00000002 PMRD no hits microPC no hits | UniProt no hits RFAM lin-4: 5e-34 |
MOREmiRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
download this record
evidence: 454
references
[1] Campo-Paysaa F, Semon M, Cameron RA, Peterson KJ, Schubert M, Evol Dev. 13:15-27(2011)., "microRNA complements in deuterostomes: origin and evolution of microRNAs"
[2] Wheeler BM, Heimberg AM, Moy VN, Sperling EA, Holstein TW, Heber S, Peterson KJ, Evol Dev. 11:50-68(2009)., "The deep evolution of metazoan microRNAs"
