ABOUT THIS RECORDspecies: Strongylocentrotus purpuratus
miRNA family: mir-133
source: miRBase, original name: spu-mir-133 (MI0010204)
Taxonomy by NCBI:
Strongylocentrotus purpuratus Strongylocentrotus Strongylocentrotidae Echinoida Echinacea Euechinoidea Echinoidea Echinozoa Eleutherozoa Echinodermata Deuterostomia Coelomata Bilateria Eumetazoa Metazoa Fungi/Metazoa group Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA TTTGGTCCCCTTCAACCAGCCGT miRNA* AGCTGGTAAACGGGAACCAAATC mismatches: 8 bulges: 0 |
pre-miRNA
TCCGGAAAATGTAGCGCTTTAGCTGGTAAACGGGAACCAAATCGTGAAGTAAATGCGGATTTGGTCCCCTTCAACCAGCCGTAGCACTGCATTCTAGACA
A
dot-bracket secondary structure
((..((..((((((.(((...((((((....(((.((((((((((.........)).)))))))).)))....))))))...))).))))))))..))..
.
SIMILARITIES
MORE
miRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
download this record
evidence: 454
references
[1] Wheeler BM, Heimberg AM, Moy VN, Sperling EA, Holstein TW, Heber S, Peterson KJ, Evol Dev. 11:50-68(2009)., "The deep evolution of metazoan microRNAs"
TCCGGAAAATGTAGCGCTTTAGCTGGTAAACGGGAACCAAATCGTGAAGTAAATGCGGATTTGGTCCCCTTCAACCAGCCGTAGCACTGCATTCTAGACA
A
dot-bracket secondary structure
((..((..((((((.(((...((((((....(((.((((((((((.........)).)))))))).)))....))))))...))).))))))))..))..
.
SIMILARITIES| miRBase bfl-mir-133: 0.00000002 PMRD no hits microPC no hits | UniProt no hits RFAM mir-133: 4e-44 |
MOREmiRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
download this record
evidence: 454
references
[1] Wheeler BM, Heimberg AM, Moy VN, Sperling EA, Holstein TW, Heber S, Peterson KJ, Evol Dev. 11:50-68(2009)., "The deep evolution of metazoan microRNAs"
